library(multiMiR)
## Welcome to multiMiR.
## 
## multiMiR database URL has been set to the 
## default value: http://multimir.org/
## 
## Database Version: 2.3.0  Updated: 2020-04-15
library(clusterProfiler)
## 
## clusterProfiler v4.12.2 Learn more at https://yulab-smu.top/contribution-knowledge-mining/
## 
## Please cite:
## 
## T Wu, E Hu, S Xu, M Chen, P Guo, Z Dai, T Feng, L Zhou, W Tang, L Zhan,
## X Fu, S Liu, X Bo, and G Yu. clusterProfiler 4.0: A universal
## enrichment tool for interpreting omics data. The Innovation. 2021,
## 2(3):100141
## 
## Attaching package: 'clusterProfiler'
## The following object is masked from 'package:multiMiR':
## 
##     select
## The following object is masked from 'package:stats':
## 
##     filter
library(org.Hs.eg.db)
## Loading required package: AnnotationDbi
## Loading required package: stats4
## Loading required package: BiocGenerics
## 
## Attaching package: 'BiocGenerics'
## The following objects are masked from 'package:stats':
## 
##     IQR, mad, sd, var, xtabs
## The following objects are masked from 'package:base':
## 
##     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
##     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
##     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
##     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
##     Position, rank, rbind, Reduce, rownames, sapply, setdiff, table,
##     tapply, union, unique, unsplit, which.max, which.min
## Loading required package: Biobase
## Welcome to Bioconductor
## 
##     Vignettes contain introductory material; view with
##     'browseVignettes()'. To cite Bioconductor, see
##     'citation("Biobase")', and for packages 'citation("pkgname")'.
## Loading required package: IRanges
## Loading required package: S4Vectors
## 
## Attaching package: 'S4Vectors'
## The following object is masked from 'package:clusterProfiler':
## 
##     rename
## The following object is masked from 'package:utils':
## 
##     findMatches
## The following objects are masked from 'package:base':
## 
##     expand.grid, I, unname
## 
## Attaching package: 'IRanges'
## The following object is masked from 'package:clusterProfiler':
## 
##     slice
## The following object is masked from 'package:grDevices':
## 
##     windows
## 
## Attaching package: 'AnnotationDbi'
## The following object is masked from 'package:clusterProfiler':
## 
##     select
## 
library(stringr)
library(ggplot2)

0. Loading of Results

A. List of all Gene names in the dataset

gene.names = readRDS("data/derived/unique_gene_names.rds")

B. Selected Features

results.ggm= readRDS("data/sel_features/results_ggm_network_stats_all.rds")
ggm.RPPA = results.ggm$full_sample$`RPPA Array`$`FDR1e-1`
names.ggm.RPPA = rownames(ggm.RPPA[which(ggm.RPPA$degree > 0),])

ggm.R2Gn.min = results.ggm$full_sample$RNASeq2GeneNorm$`FDR1e-14`
names.ggm.R2Gn.min = rownames(ggm.R2Gn.min[which(ggm.R2Gn.min$degree > mean(ggm.R2Gn.min$degree)),])
ggm.R2Gn.6 = results.ggm$full_sample$RNASeq2GeneNorm$`FDR1e-6`
names.ggm.R2Gn.6 = rownames(ggm.R2Gn.6[which(ggm.R2Gn.6$degree > mean(ggm.R2Gn.6$degree)),])

ggm.mRSG.min = results.ggm$full_sample$miRNASeqGene$`FDR1e-13`
names.ggm.mRSG.min = rownames(ggm.mRSG.min[which(ggm.mRSG.min$degree > mean(ggm.mRSG.min$degree)),])
ggm.mRSG.6 = results.ggm$full_sample$miRNASeqGene$`FDR1e-6`
names.ggm.mRSG.6 = rownames(ggm.mRSG.6[which(ggm.mRSG.6$degree > mean(ggm.mRSG.6$degree)),])

ggm.all.min = results.ggm$full_sample$all$`FDR1e-14`
names.ggm.all.min = rownames(ggm.all.min[which(ggm.all.min$degree > mean(ggm.all.min$degree)),])
ggm.all.6 = results.ggm$full_sample$all$`FDR1e-6`
names.ggm.all.6 = rownames(ggm.all.6[which(ggm.all.6$degree > mean(ggm.all.6$degree)),])

ggm.RPPA.a = results.ggm$by_vital_status$`RPPA Array`$alive$`FDR1e-1`
names.ggm.RPPA.a = rownames(ggm.RPPA.a[which(ggm.RPPA.a$degree > 0), ])

ggm.RPPA.d = results.ggm$by_vital_status$`RPPA Array`$dead$`FDR1e-1`
names.ggm.RPPA.d = rownames(ggm.RPPA.d[which(ggm.RPPA.d$degree > 0), ])

ggm.R2Gn.min.a = results.ggm$by_vital_status$RNASeq2GeneNorm$alive$`FDR1e-14`
names.ggm.R2Gn.min.a = rownames(ggm.R2Gn.min.a[which(ggm.R2Gn.min.a$degree > mean(ggm.R2Gn.min.a$degree)),])

ggm.R2Gn.min.d = results.ggm$by_vital_status$RNASeq2GeneNorm$dead$`FDR1e-14`
names.ggm.R2Gn.min.d = rownames(ggm.R2Gn.min.d[which(ggm.R2Gn.min.d$degree > mean(ggm.R2Gn.min.d$degree)),])

ggm.R2Gn.6.a = results.ggm$by_vital_status$RNASeq2GeneNorm$alive$`FDR1e-6`
names.ggm.R2Gn.6.a = rownames(ggm.R2Gn.6.a[which(ggm.R2Gn.6.a$degree > mean(ggm.R2Gn.6.a$degree)), ])

ggm.R2Gn.6.d = results.ggm$by_vital_status$RNASeq2GeneNorm$dead$`FDR1e-6`
names.ggm.R2Gn.6.d = rownames(ggm.R2Gn.6.d[which(ggm.R2Gn.6.d$degree > mean(ggm.R2Gn.6.d$degree)), ])

#ggm.RR.min.a = results.ggm$by_vital_status$`RPPA + R2Gn`$alive$`FDR1e-14`
#names.ggm.RR.min.a = rownames(ggm.RR.min.a[which(ggm.RR.min.a$degree > mean(ggm.RR.min.a$degree)), ])

#ggm.RR.min.d = results.ggm$by_vital_status$`RPPA + R2Gn`$dead$`FDR1e-14`
#names.ggm.RR.min.d = rownames(ggm.RR.min.d[which(ggm.RR.min.d$degree > mean(ggm.RR.min.d$degree)), ])

#ggm.RR.6.a = results.ggm$by_vital_status$`RPPA + R2Gn`$alive$`FDR1e-6`
#names.ggm.RR.6.a = rownames(ggm.RR.6.a[which(ggm.RR.6.a$degree > mean(ggm.RR.6.a$degree)), ])

#ggm.RR.6.d = results.ggm$by_vital_status$`RPPA + R2Gn`$dead$`FDR1e-6`
#names.ggm.RR.6.d = rownames(ggm.RR.6.d[which(ggm.RR.6.d$degree > mean(ggm.RR.6.d$degree)), ])

ggm.mRSG.min.a = results.ggm$by_vital_status$miRNASeqGene$alive$`FDR1e-13`
names.ggm.mRSG.min.a = rownames(ggm.mRSG.min.a[which(ggm.mRSG.min.a$degree > mean(ggm.mRSG.min.a$degree)),])

ggm.mRSG.min.d = results.ggm$by_vital_status$miRNASeqGene$dead$`FDR1e-13`
names.ggm.mRSG.min.d = rownames(ggm.mRSG.min.d[which(ggm.mRSG.min.d$degree > mean(ggm.mRSG.min.d$degree)),])

ggm.mRSG.6.a = results.ggm$by_vital_status$miRNASeqGene$alive$`FDR1e-6`
names.ggm.mRSG.6.a = rownames(ggm.mRSG.6.a[which(ggm.mRSG.6.a$degree > mean(ggm.mRSG.6.a$degree)), ])

ggm.mRSG.6.d = results.ggm$by_vital_status$miRNASeqGene$dead$`FDR1e-6`
names.ggm.mRSG.6.d = rownames(ggm.mRSG.6.d[which(ggm.mRSG.6.d$degree > mean(ggm.mRSG.6.d$degree)), ])

ggm.all.min.a = results.ggm$by_vital_status$all$alive$`FDR1e-14`
names.ggm.all.min.a = rownames(ggm.all.min.a[which(ggm.all.min.a$degree > mean(ggm.all.min.a$degree)),])

ggm.all.min.d = results.ggm$by_vital_status$all$dead$`FDR1e-14`
names.ggm.all.min.d = rownames(ggm.all.min.d[which(ggm.all.min.d$degree > mean(ggm.all.min.d$degree)),])

ggm.all.6.a = results.ggm$by_vital_status$all$alive$`FDR1e-6`
names.ggm.all.6.a = rownames(ggm.all.6.a[which(ggm.all.6.a$degree > mean(ggm.all.6.a$degree)), ])

ggm.all.6.d = results.ggm$by_vital_status$all$dead$`FDR1e-6`
names.ggm.all.6.d = rownames(ggm.all.6.d[which(ggm.all.6.d$degree > mean(ggm.all.6.d$degree)), ])

1. Convert microRNA to genes

Also remove the ending “.R2Gn” and “.RPPA” from gene names.

split.by.omic = function(variable.list) {
  out.mRSG = variable.list[startsWith(variable.list, "hsa")]
  out.R2Gn = variable.list[endsWith(variable.list, ".R2Gn")]
  out.RPPA = variable.list[endsWith(variable.list, ".RPPA")]
  out = list("miRNASeqGene" = out.mRSG,
             "RNASeq2GeneNorm" = out.R2Gn,
             "RPPAArray" = out.RPPA)
  out
}
multiomics.to.GENES = function(sel.features, full.search = F, table = "validated", drop.miRNA = F) {
  multiomics.list = split.by.omic(sel.features)
  # Convert miRNASeqGene to target GENE names
  # Skipped and returns an empty list instead of the list of select features,
  # or if microRNA features are explicitly dropped (drop.miRNA = T).
  # (Usually done when the features has only a few miRNA and unable to target any genes)
  if (length(multiomics.list[[1]]) > 0 & !drop.miRNA) {
    if (!full.search) { # Search only among the 198 genes in ACC, recommended
    targets= get_multimir(mirna = multiomics.list[[1]], 
                          target = gene.names,
                          table = table,
                          summary = T)
    mRSG.target.genes = unique(targets@data$target_symbol)
    } else { # Search the full dataset, not recommended. 
             # Use only if ACC gene search returns nothing or fails.
             # Genes not in the ACC genes need to be manually removed.
    targets= get_multimir(mirna = multiomics.list[[1]], 
                          table = table,
                          summary = T)  
    mRSG.target.genes = unique(targets@data$target_symbol)
    }
    
  } else {
    mRSG.target.genes = list()
  }
  #Remove suffix for Pathway Analysis Compatibility
  R2Gn.genes = str_remove(multiomics.list[[2]], ".R2Gn")
  
  RPPA.genes = str_remove(multiomics.list[[3]], ".RPPA")
  
  #Join all cleaned-up genes are remove duplicates.
  out1 = c(mRSG.target.genes, R2Gn.genes, RPPA.genes)
  out = as.character(unique(out1))
  out
}
geneNames <- list("RPPA"= multiomics.to.GENES(names.ggm.RPPA),
                  "R2Gn.min"= multiomics.to.GENES(names.ggm.R2Gn.min),
                  "R2Gn.6"= multiomics.to.GENES(names.ggm.R2Gn.6),
                  "mRSG.min"= multiomics.to.GENES(names.ggm.mRSG.min),
                  "mRSG.6"= multiomics.to.GENES(names.ggm.mRSG.6),
                  "all.min"= multiomics.to.GENES(names.ggm.all.min),
                  "all.6"= multiomics.to.GENES(names.ggm.all.6),
                  
                  "RPPA.0" = multiomics.to.GENES(names.ggm.RPPA.a),
                  "RPPA.1" = multiomics.to.GENES(names.ggm.RPPA.d),
                  "R2Gn.min.0" = multiomics.to.GENES(names.ggm.R2Gn.min.a),
                  "R2Gn.min.1" = multiomics.to.GENES(names.ggm.R2Gn.min.d),
                  "R2Gn.6.0" = multiomics.to.GENES(names.ggm.R2Gn.6.a),
                  "R2Gn.6.1" = multiomics.to.GENES(names.ggm.R2Gn.6.d),
                  #"RR.min.0" = multiomics.to.GENES(names.ggm.RR.min.a),
                  #"RR.min.1" = multiomics.to.GENES(names.ggm.RR.min.d),
                  #"RR.6.0" = multiomics.to.GENES(names.ggm.RR.6.a),
                  #"RR.6.1" = multiomics.to.GENES(names.ggm.RR.6.d)
                  "mRSG.min.0" = multiomics.to.GENES(names.ggm.mRSG.min.a),
                  "mRSG.min.1" = multiomics.to.GENES(names.ggm.mRSG.min.d),
                  "mRSG.6.0" = multiomics.to.GENES(names.ggm.mRSG.6.a),
                  "mRSG.6.1" = multiomics.to.GENES(names.ggm.mRSG.6.d),
                  "all.min.0" = multiomics.to.GENES(names.ggm.all.min.a),
                  "all.min.1" = multiomics.to.GENES(names.ggm.all.min.d),
                  "all.6.0" = multiomics.to.GENES(names.ggm.all.6.a),
                  "all.6.1" = multiomics.to.GENES(names.ggm.all.6.d)
                  )
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
geneNames
## $RPPA
##  [1] "IGFBP2" "PDCD4"  "GAPDH"  "FASN"   "MYH11"  "TFRC"   "GATA3"  "ATM"   
##  [9] "TTF1"   "G6PD"   "AR"     "PTEN"   "MSH6"   "MSH2"  
## 
## $R2Gn.min
##  [1] "GAPDH"    "SQSTM1"   "FN1"      "EEF2"     "HSPA1A"   "IGFBP2"  
##  [7] "RPS6"     "SYP"      "CTNNB1"   "TGM2"     "CDH2"     "CCND1"   
## [13] "FASN"     "SERPINE1" "PRKCA"    "PIK3R1"   "TUBA1B"   "COL6A1"  
## [19] "G6PD"     "CDKN1A"   "PEA15"    "CTNNA1"   "PDCD4"    "NDRG1"   
## [25] "ERBB3"    "ANXA1"    "ADAR"     "TFRC"     "YWHAZ"    "YWHAB"   
## [31] "PXN"      "ERRFI1"   "EIF4G1"   "STMN1"    "PIK3R2"   "ITGA2"   
## [37] "MYH9"     "YWHAE"    "RAB11A"   "PARP1"    "KDR"      "CDK1"    
## [43] "BCL2L1"   "CCNB1"    "PREX1"    "IDH3A"   
## 
## $R2Gn.6
##  [1] "GAPDH"    "SQSTM1"   "FN1"      "HSPA1A"   "EEF2"     "IGFBP2"  
##  [7] "SYP"      "RPS6"     "TGM2"     "CTNNB1"   "COL6A1"   "CDH2"    
## [13] "FASN"     "SERPINE1" "ERBB3"    "PIK3R1"   "G6PD"     "CDKN1A"  
## [19] "PRKCA"    "CCND1"    "TUBA1B"   "PEA15"    "ANXA1"    "ADAR"    
## [25] "PDCD4"    "NDRG1"    "CTNNA1"   "TFRC"     "ITGA2"    "ERRFI1"  
## [31] "PIK3R2"   "PXN"      "YWHAZ"    "MYH9"     "DIRAS3"   "STMN1"   
## [37] "EIF4G1"   "YWHAE"    "AKT2"     "CCNB1"    "YWHAB"    "PREX1"   
## [43] "PRDX1"    "AKT1"     "CDK1"     "ANLN"     "SHC1"     "JUN"     
## [49] "PARK7"    "BCL2L1"   "KDR"      "RAB11A"   "FOXM1"    "PARP1"   
## [55] "ANXA7"   
## 
## $mRSG.min
##   [1] "ESR1"     "MET"      "BAP1"     "ERRFI1"   "AKT2"     "PTEN"    
##   [7] "G6PD"     "BCL2"     "KIT"      "NCOA3"    "ERBB3"    "NF2"     
##  [13] "KRAS"     "NRAS"     "RB1"      "PDCD4"    "MYH9"     "PTK2"    
##  [19] "CCND1"    "CDKN1A"   "CDKN1B"   "IRS1"     "MYC"      "EGFR"    
##  [25] "JUN"      "PIK3R1"   "NOTCH3"   "BCL2L11"  "EZH2"     "RAF1"    
##  [31] "PTGS2"    "ETS1"     "STMN1"    "SHC1"     "FOXO3"    "YWHAZ"   
##  [37] "AKT1"     "BCL2L1"   "ATM"      "STAT5A"   "STAT3"    "PARP1"   
##  [43] "XIAP"     "CASP8"    "CHEK1"    "DVL3"     "GSK3B"    "IGF1R"   
##  [49] "ITGA2"    "MAPT"     "YBX1"     "PRKAA1"   "MAPK8"    "PXN"     
##  [55] "SRSF1"    "YWHAE"    "ARID1A"   "PEA15"    "CCNE2"    "TUBA1B"  
##  [61] "BID"      "CHEK2"    "PRKCD"    "RAB25"    "PRRT2"    "MACC1"   
##  [67] "ACACA"    "E2F1"     "HSPA1A"   "ADAR"     "AXL"      "CAV1"    
##  [73] "MSH2"     "CASP3"    "CCNE1"    "ANXA1"    "TFF1"     "YAP1"    
##  [79] "ASNS"     "CTNNB1"   "EEF2"     "EIF4E"    "EIF4EBP1" "EIF4G1"  
##  [85] "FOXM1"    "FN1"      "GAPDH"    "MSH6"     "IGFBP2"   "PRDX1"   
##  [91] "PIK3CA"   "PRKCA"    "MAPK1"    "RET"      "RPS6"     "RPS6KB1" 
##  [97] "TFRC"     "RAB11A"   "SQSTM1"   "GAB2"     "NDRG1"    "WWTR1"   
## [103] "ANLN"     "DIABLO"   "NEK7"     "RICTOR"   "ERCC1"    "INPP4B"  
## [109] "TP53BP1"  "FASN"     "BRAF"     "LCN2"     "RAD50"   
## 
## $mRSG.6
##   [1] "ESR1"     "AKT2"     "BAP1"     "ERRFI1"   "MET"      "PTEN"    
##   [7] "NOTCH1"   "G6PD"     "BCL2"     "KIT"      "NCOA3"    "ERBB3"   
##  [13] "NF2"      "HSPA1A"   "KRAS"     "NRAS"     "RB1"      "ADAR"    
##  [19] "PDCD4"    "MYH9"     "PTK2"     "CCND1"    "CDKN1A"   "CDKN1B"  
##  [25] "IRS1"     "MYC"      "EGFR"     "JUN"      "PIK3R1"   "NOTCH3"  
##  [31] "BCL2L11"  "EZH2"     "PIK3R2"   "RAF1"     "PTGS2"    "ETS1"    
##  [37] "STMN1"    "SHC1"     "FOXO3"    "YWHAZ"    "AKT1"     "VHL"     
##  [43] "BCL2L1"   "ATM"      "STAT5A"   "STAT3"    "PARP1"    "XIAP"    
##  [49] "CASP8"    "CDK1"     "CHEK1"    "CTNNB1"   "DVL3"     "MTOR"    
##  [55] "GSK3B"    "IGF1R"    "ITGA2"    "MAPT"     "YBX1"     "PRKAA1"  
##  [61] "PRKCA"    "MAPK1"    "MAPK8"    "PXN"      "SRSF1"    "YWHAE"   
##  [67] "ARID1A"   "BECN1"    "PEA15"    "CCNE2"    "TUBA1B"   "EEF2K"   
##  [73] "AKT1S1"   "BID"      "CHEK2"    "MYH11"    "YWHAB"    "PRKCD"   
##  [79] "RAB25"    "PRRT2"    "MACC1"    "ACACA"    "E2F1"     "AXL"     
##  [85] "CAV1"     "MSH2"     "CASP3"    "CCNE1"    "ANXA1"    "TFF1"    
##  [91] "YAP1"     "ASNS"     "EEF2"     "EIF4E"    "EIF4EBP1" "EIF4G1"  
##  [97] "FOXM1"    "FN1"      "GAPDH"    "MSH6"     "IGFBP2"   "SMAD4"   
## [103] "PRDX1"    "PIK3CA"   "RET"      "RPS6"     "RPS6KB1"  "TFRC"    
## [109] "XRCC1"    "RAB11A"   "SQSTM1"   "GAB2"     "NDRG1"    "WWTR1"   
## [115] "ANLN"     "DIABLO"   "NEK7"     "RICTOR"   "ERCC1"    "INPP4B"  
## [121] "TP53BP1"  "FASN"     "BRAF"     "LCN2"     "RAD50"   
## 
## $all.min
##   [1] "ESR1"     "AKT2"     "BAP1"     "ERRFI1"   "MET"      "PTEN"    
##   [7] "NOTCH1"   "G6PD"     "BCL2"     "KIT"      "NCOA3"    "ERBB3"   
##  [13] "NF2"      "KRAS"     "NRAS"     "RB1"      "ADAR"     "PDCD4"   
##  [19] "MYH9"     "CCND1"    "CDKN1A"   "CDKN1B"   "IRS1"     "MYC"     
##  [25] "EGFR"     "JUN"      "PIK3R1"   "NOTCH3"   "BCL2L11"  "EZH2"    
##  [31] "PIK3R2"   "RAF1"     "PTGS2"    "ETS1"     "STMN1"    "SHC1"    
##  [37] "FOXO3"    "YWHAZ"    "AKT1"     "BCL2L1"   "ATM"      "STAT5A"  
##  [43] "STAT3"    "PARP1"    "XIAP"     "AR"       "CASP8"    "CDK1"    
##  [49] "CHEK1"    "CTNNB1"   "DVL3"     "EEF2"     "EIF4E"    "EIF4G1"  
##  [55] "GSK3B"    "IGF1R"    "ITGA2"    "MAPT"     "YBX1"     "PRKAA1"  
##  [61] "PRKCA"    "MAPK1"    "MAPK8"    "PXN"      "RAD51"    "SRSF1"   
##  [67] "TFRC"     "YWHAE"    "ARID1A"   "BECN1"    "PEA15"    "CCNE2"   
##  [73] "TUBA1B"   "NDRG1"    "EEF2K"    "DIABLO"   "AKT1S1"   "BID"     
##  [79] "ERCC1"    "CHEK2"    "MYH11"    "INPP4B"   "YWHAB"    "PRKCD"   
##  [85] "RAB25"    "PRRT2"    "MACC1"    "ACACA"    "E2F1"     "HSPA1A"  
##  [91] "PREX1"    "AXL"      "PTK2"     "CAV1"     "MSH2"     "CASP3"   
##  [97] "CCNE1"    "ANXA1"    "TFF1"     "YAP1"     "ANXA7"    "ASNS"    
## [103] "EIF4EBP1" "FOXM1"    "FN1"      "GAPDH"    "MSH6"     "IGFBP2"  
## [109] "SMAD4"    "PRDX1"    "SERPINE1" "PIK3CA"   "RET"      "RPS6"    
## [115] "RPS6KB1"  "XRCC1"    "RAB11A"   "SQSTM1"   "GAB2"     "WWTR1"   
## [121] "ANLN"     "NEK7"     "RICTOR"   "TP53BP1"  "FASN"     "BRAF"    
## [127] "LCN2"     "RAD50"    "SYP"      "TGM2"     "COL6A1"   "CDH2"    
## [133] "CTNNA1"   "DIRAS3"   "GATA3"    "RBM15"    "TTF1"     "VHL"     
## [139] "TSC1"     "ACVRL1"  
## 
## $all.6
##   [1] "ESR1"     "AKT2"     "BAP1"     "ERRFI1"   "MET"      "PTEN"    
##   [7] "NOTCH1"   "G6PD"     "BCL2"     "KIT"      "NCOA3"    "ERBB2"   
##  [13] "ERBB3"    "NF2"      "HSPA1A"   "KRAS"     "NRAS"     "RB1"     
##  [19] "ADAR"     "PDCD4"    "MYH9"     "PTK2"     "CCND1"    "CDKN1A"  
##  [25] "CDKN1B"   "IRS1"     "MYC"      "EGFR"     "JUN"      "PIK3R1"  
##  [31] "NOTCH3"   "BCL2L11"  "EZH2"     "PIK3R2"   "RAF1"     "PTGS2"   
##  [37] "ETS1"     "STMN1"    "SHC1"     "FOXO3"    "YWHAZ"    "AKT1"    
##  [43] "VHL"      "BCL2L1"   "ATM"      "STAT5A"   "STAT3"    "PARP1"   
##  [49] "XIAP"     "AR"       "CASP8"    "CDK1"     "CHEK1"    "CTNNB1"  
##  [55] "DVL3"     "EEF2"     "EIF4E"    "EIF4G1"   "MTOR"     "GSK3B"   
##  [61] "IGF1R"    "ITGA2"    "MAPT"     "YBX1"     "PRKAA1"   "PRKCA"   
##  [67] "MAPK1"    "MAPK8"    "PXN"      "RAD51"    "SRSF1"    "TFRC"    
##  [73] "YWHAE"    "ARID1A"   "BECN1"    "PEA15"    "CCNE2"    "TUBA1B"  
##  [79] "NDRG1"    "EEF2K"    "DIABLO"   "AKT1S1"   "BID"      "ERCC1"   
##  [85] "CHEK2"    "MYH11"    "INPP4B"   "YWHAB"    "PRKCD"    "RAB25"   
##  [91] "PRRT2"    "MACC1"    "ACACA"    "SMAD1"    "E2F1"     "PREX1"   
##  [97] "AXL"      "CAV1"     "MSH2"     "CASP3"    "CCNE1"    "ANXA1"   
## [103] "TFF1"     "YAP1"     "ANXA7"    "ASNS"     "EIF4EBP1" "FOXM1"   
## [109] "FN1"      "GAPDH"    "MSH6"     "IGFBP2"   "SMAD4"    "PRDX1"   
## [115] "SERPINE1" "PIK3CA"   "RET"      "RPS6"     "RPS6KB1"  "XRCC1"   
## [121] "RAB11A"   "SQSTM1"   "GAB2"     "WWTR1"    "ANLN"     "NEK7"    
## [127] "RICTOR"   "TP53BP1"  "FASN"     "BRAF"     "LCN2"     "RAD50"   
## [133] "SYP"      "TGM2"     "COL6A1"   "CDH2"     "CTNNA1"   "DIRAS3"  
## [139] "GATA3"    "RBM15"    "TTF1"     "TSC1"     "ACVRL1"   "XBP1"    
## 
## $RPPA.0
##  [1] "GAPDH"  "G6PD"   "IGFBP2" "FASN"   "PDCD4"  "AR"     "MYH11"  "PREX1" 
##  [9] "ATM"    "TTF1"   "MSH6"   "TFRC"   "RBM15"  "GATA3"  "EGFR"   "TSC1"  
## [17] "IRS1"   "MSH2"  
## 
## $RPPA.1
##  [1] "TFRC"   "FASN"   "GATA3"  "GAPDH"  "G6PD"   "MYH11"  "PDCD4"  "MSH6"  
##  [9] "ATM"    "RBM15"  "ASNS"   "PTEN"   "MSH2"   "IGFBP2" "PEA15"  "EGFR"  
## [17] "INPP4B" "TSC1"   "VHL"    "TTF1"   "IRS1"   "PRDX1"  "XBP1"   "NF2"   
## [25] "PDK1"  
## 
## $R2Gn.min.0
##  [1] "GAPDH"    "SQSTM1"   "EEF2"     "TGM2"     "HSPA1A"   "IGFBP2"  
##  [7] "COL6A1"   "SYP"      "CTNNB1"   "CDH2"     "FASN"     "RPS6"    
## [13] "PRKCA"    "ANXA1"    "G6PD"     "NDRG1"    "ERBB3"    "CTNNA1"  
## [19] "SERPINE1" "PDCD4"    "FN1"      "PIK3R1"   "CCND1"    "MYH9"    
## [25] "PXN"      "ERRFI1"   "PREX1"    "AKT2"     "CDKN1A"   "YWHAZ"   
## [31] "PEA15"    "RBM3"     "AKT1"     "ITGA2"    "ADAR"     "RAB11A"  
## [37] "YWHAB"    "TFRC"     "PARP1"    "DIRAS3"   "KDR"      "EIF4G1"  
## [43] "JUN"      "TUBA1B"   "STAT5A"   "PIK3R2"   "XBP1"     "NOTCH3"  
## 
## $R2Gn.min.1
##  [1] "FN1"      "SYP"      "EEF2"     "GAPDH"    "HSPA1A"   "CTNNB1"  
##  [7] "SQSTM1"   "RPS6"     "CCND1"    "ADAR"     "CDH2"     "TUBA1B"  
## [13] "TFRC"     "SERPINE1" "FASN"     "CDKN1A"   "PEA15"    "COL6A1"  
## [19] "PIK3R2"   "SHC1"     "ITGA2"    "STMN1"    "NDRG1"    "AKT1"    
## [25] "IGFBP2"   "YWHAE"    "TGM2"     "PXN"      "EIF4G1"   "PRKCA"   
## [31] "PIK3R1"   "DIRAS3"   "G6PD"     "PARK7"    "MYH9"     "ANXA1"   
## [37] "PRKCD"    "BAP1"     "PDCD4"    "JUN"      "CCNB1"    "DVL3"    
## [43] "FOXM1"    "ANXA7"    "IDH3A"   
## 
## $R2Gn.6.0
##  [1] "GAPDH"    "SQSTM1"   "IGFBP2"   "TGM2"     "HSPA1A"   "EEF2"    
##  [7] "COL6A1"   "ERBB3"    "SYP"      "CDH2"     "PRKCA"    "FASN"    
## [13] "CTNNB1"   "ANXA1"    "RPS6"     "PDCD4"    "G6PD"     "NDRG1"   
## [19] "FN1"      "PIK3R1"   "CTNNA1"   "ERRFI1"   "SERPINE1" "CCND1"   
## [25] "MYH9"     "YWHAZ"    "PEA15"    "PXN"      "TFRC"     "PARP1"   
## [31] "PREX1"    "AKT2"     "CDKN1A"   "EIF4G1"   "BCL2L1"   "KDR"     
## [37] "AKT1"     "JUN"      "TUBA1B"   "PIK3R2"   "ITGA2"    "YWHAE"   
## [43] "RAB11A"   "ETS1"     "STAT5A"   "DIRAS3"   "MET"      "ADAR"    
## [49] "RBM3"     "STMN1"    "NOTCH3"   "YWHAB"    "ANXA7"   
## 
## $R2Gn.6.1
##  [1] "FN1"      "GAPDH"    "SYP"      "SQSTM1"   "HSPA1A"   "EEF2"    
##  [7] "CTNNB1"   "RPS6"     "ADAR"     "CCND1"    "TUBA1B"   "CDH2"    
## [13] "TFRC"     "CDKN1A"   "FASN"     "SERPINE1" "COL6A1"   "PEA15"   
## [19] "SHC1"     "PIK3R2"   "IGFBP2"   "ITGA2"    "YWHAE"    "STMN1"   
## [25] "EIF4G1"   "NDRG1"    "PRKCA"    "TGM2"     "PXN"      "AKT1"    
## [31] "DIRAS3"   "JUN"      "ANXA1"    "PCNA"     "PDCD4"    "MYH9"    
## [37] "G6PD"     "IDH3A"    "PRKCD"    "MAPK1"    "BAP1"     "PARK7"   
## [43] "PIK3R1"   "RBM3"     "ANLN"     "CCNB1"    "CDK1"     "CTNNA1"  
## [49] "ANXA7"   
## 
## $mRSG.min.0
##   [1] "ESR1"     "AKT2"     "BAP1"     "ERRFI1"   "MET"      "PTEN"    
##   [7] "NOTCH1"   "G6PD"     "BCL2"     "KIT"      "NCOA3"    "ERBB2"   
##  [13] "ERBB3"    "NF2"      "KRAS"     "NRAS"     "RB1"      "ADAR"    
##  [19] "PDCD4"    "MYH9"     "CCND1"    "CDKN1A"   "CDKN1B"   "IRS1"    
##  [25] "MYC"      "EGFR"     "JUN"      "PIK3R1"   "NOTCH3"   "BCL2L11" 
##  [31] "EZH2"     "PIK3R2"   "RAF1"     "PTGS2"    "ETS1"     "STMN1"   
##  [37] "SHC1"     "FOXO3"    "YWHAZ"    "AKT1"     "BCL2L1"   "ATM"     
##  [43] "STAT5A"   "STAT3"    "PARP1"    "XIAP"     "AR"       "CASP8"   
##  [49] "CDK1"     "CHEK1"    "CTNNB1"   "DVL3"     "EEF2"     "EIF4E"   
##  [55] "EIF4G1"   "GSK3B"    "IGF1R"    "ITGA2"    "MAPT"     "YBX1"    
##  [61] "PRKAA1"   "PRKCA"    "MAPK1"    "MAPK8"    "PXN"      "RAD51"   
##  [67] "SRSF1"    "TFRC"     "YWHAE"    "ARID1A"   "BECN1"    "PEA15"   
##  [73] "CCNE2"    "TUBA1B"   "NDRG1"    "EEF2K"    "DIABLO"   "AKT1S1"  
##  [79] "BID"      "ERCC1"    "CHEK2"    "MYH11"    "INPP4B"   "YWHAB"   
##  [85] "PRKCD"    "RAB25"    "PRRT2"    "MACC1"    "ACACA"    "SMAD1"   
##  [91] "E2F1"     "HSPA1A"   "PREX1"    "AXL"      "PTK2"     "CAV1"    
##  [97] "MSH2"     "CASP3"    "CCNE1"    "ANXA1"    "TFF1"     "YAP1"    
## [103] "ANXA7"    "ASNS"     "EIF4EBP1" "FOXM1"    "FN1"      "GAPDH"   
## [109] "MSH6"     "IGFBP2"   "SMAD4"    "PRDX1"    "SERPINE1" "PIK3CA"  
## [115] "RET"      "RPS6"     "RPS6KB1"  "XRCC1"    "RAB11A"   "SQSTM1"  
## [121] "GAB2"     "WWTR1"    "ANLN"     "NEK7"     "RICTOR"   "TP53BP1" 
## [127] "FASN"     "BRAF"     "LCN2"     "RAD50"   
## 
## $mRSG.min.1
##   [1] "ESR1"     "MET"      "BAP1"     "ERRFI1"   "AKT2"     "PTEN"    
##   [7] "G6PD"     "BCL2"     "KIT"      "NCOA3"    "ERBB3"    "KRAS"    
##  [13] "NRAS"     "RB1"      "ADAR"     "PDCD4"    "MYH9"     "CCND1"   
##  [19] "CDKN1A"   "CDKN1B"   "IRS1"     "MYC"      "EGFR"     "JUN"     
##  [25] "PIK3R1"   "NOTCH3"   "BCL2L11"  "EZH2"     "PIK3R2"   "RAF1"    
##  [31] "PTGS2"    "ETS1"     "STMN1"    "SHC1"     "FOXO3"    "YWHAZ"   
##  [37] "AKT1"     "BCL2L1"   "STAT5A"   "STAT3"    "PARP1"    "XIAP"    
##  [43] "AR"       "CHEK1"    "DVL3"     "EIF4E"    "EIF4G1"   "GSK3B"   
##  [49] "IGF1R"    "ITGA2"    "MAPT"     "YBX1"     "PRKAA1"   "PRKCA"   
##  [55] "MAPK1"    "MAPK8"    "PXN"      "RAD51"    "SRSF1"    "YWHAE"   
##  [61] "ARID1A"   "PEA15"    "CCNE2"    "TUBA1B"   "NDRG1"    "EEF2K"   
##  [67] "AKT1S1"   "BID"      "ERCC1"    "CHEK2"    "MYH11"    "INPP4B"  
##  [73] "YWHAB"    "PRKCD"    "RAB25"    "PRRT2"    "ACACA"    "E2F1"    
##  [79] "HSPA1A"   "CASP9"    "PREX1"    "AXL"      "PTK2"     "CDKN2A"  
##  [85] "CAV1"     "MSH2"     "CASP3"    "CCNE1"    "MAPK9"    "ANXA1"   
##  [91] "TFF1"     "YAP1"     "ANXA7"    "ASNS"     "CDK1"     "EEF2"    
##  [97] "EIF4EBP1" "FOXM1"    "FN1"      "GAPDH"    "MSH6"     "IGFBP2"  
## [103] "SMAD3"    "SMAD4"    "SERPINE1" "PIK3CA"   "MAPK3"    "RET"     
## [109] "RPS6"     "RPS6KB1"  "TFRC"     "XRCC1"    "RAB11A"   "SQSTM1"  
## [115] "GAB2"     "WWTR1"    "ANLN"     "DIABLO"   "NEK7"     "RICTOR"  
## [121] "TP53BP1"  "FASN"     "BRAF"     "LCN2"     "RAD50"   
## 
## $mRSG.6.0
##   [1] "ESR1"     "AKT2"     "BAP1"     "ERRFI1"   "MET"      "PTEN"    
##   [7] "NOTCH1"   "G6PD"     "BCL2"     "KIT"      "NCOA3"    "ERBB2"   
##  [13] "ERBB3"    "NF2"      "KRAS"     "NRAS"     "RB1"      "ADAR"    
##  [19] "PDCD4"    "MYH9"     "CCND1"    "CDKN1A"   "CDKN1B"   "IRS1"    
##  [25] "MYC"      "EGFR"     "JUN"      "PIK3R1"   "NOTCH3"   "BCL2L11" 
##  [31] "EZH2"     "PIK3R2"   "RAF1"     "PTGS2"    "ETS1"     "STMN1"   
##  [37] "SHC1"     "FOXO3"    "YWHAZ"    "AKT1"     "BCL2L1"   "ATM"     
##  [43] "STAT5A"   "STAT3"    "PARP1"    "XIAP"     "AR"       "CASP8"   
##  [49] "CDK1"     "CHEK1"    "CTNNB1"   "DVL3"     "EEF2"     "EIF4E"   
##  [55] "EIF4G1"   "GSK3B"    "IGF1R"    "ITGA2"    "MAPT"     "YBX1"    
##  [61] "PRKAA1"   "PRKCA"    "MAPK1"    "MAPK8"    "PXN"      "RAD51"   
##  [67] "SRSF1"    "TFRC"     "YWHAE"    "ARID1A"   "BECN1"    "PEA15"   
##  [73] "CCNE2"    "TUBA1B"   "NDRG1"    "EEF2K"    "DIABLO"   "AKT1S1"  
##  [79] "BID"      "ERCC1"    "CHEK2"    "MYH11"    "INPP4B"   "YWHAB"   
##  [85] "PRKCD"    "RAB25"    "PRRT2"    "MACC1"    "ACACA"    "SMAD1"   
##  [91] "E2F1"     "HSPA1A"   "PREX1"    "AXL"      "PTK2"     "CAV1"    
##  [97] "MSH2"     "CASP3"    "CCNE1"    "ANXA1"    "TFF1"     "YAP1"    
## [103] "ANXA7"    "ASNS"     "EIF4EBP1" "FOXM1"    "FN1"      "GAPDH"   
## [109] "MSH6"     "IGFBP2"   "SMAD4"    "PRDX1"    "SERPINE1" "PIK3CA"  
## [115] "RET"      "RPS6"     "RPS6KB1"  "XRCC1"    "RAB11A"   "SQSTM1"  
## [121] "GAB2"     "WWTR1"    "ANLN"     "NEK7"     "RICTOR"   "TP53BP1" 
## [127] "FASN"     "BRAF"     "LCN2"     "RAD50"   
## 
## $mRSG.6.1
##   [1] "ESR1"     "AKT2"     "BAP1"     "ERRFI1"   "MET"      "PTEN"    
##   [7] "NOTCH1"   "G6PD"     "BCL2"     "KIT"      "NCOA3"    "ERBB3"   
##  [13] "NF2"      "E2F1"     "KRAS"     "NRAS"     "RB1"      "ADAR"    
##  [19] "PDCD4"    "MYH9"     "CCND1"    "CDKN1A"   "CDKN1B"   "IRS1"    
##  [25] "MYC"      "EGFR"     "JUN"      "PIK3R1"   "NOTCH3"   "BCL2L11" 
##  [31] "EZH2"     "PIK3R2"   "RAF1"     "PTGS2"    "ETS1"     "STMN1"   
##  [37] "SHC1"     "FOXO3"    "YWHAZ"    "AKT1"     "BCL2L1"   "ATM"     
##  [43] "STAT5A"   "STAT3"    "PARP1"    "XIAP"     "AR"       "CASP8"   
##  [49] "CDK1"     "CHEK1"    "CTNNB1"   "DVL3"     "EIF4E"    "EIF4G1"  
##  [55] "GSK3B"    "IGF1R"    "ITGA2"    "MAPT"     "YBX1"     "PRKAA1"  
##  [61] "PRKCA"    "MAPK1"    "MAPK8"    "PXN"      "RAD51"    "SRSF1"   
##  [67] "YWHAE"    "ARID1A"   "BECN1"    "PEA15"    "CCNE2"    "TUBA1B"  
##  [73] "NDRG1"    "EEF2K"    "AKT1S1"   "BID"      "ERCC1"    "ACVRL1"  
##  [79] "CHEK2"    "MYH11"    "INPP4B"   "YWHAB"    "PRKCD"    "RAB25"   
##  [85] "PRRT2"    "ACACA"    "ERBB2"    "HSPA1A"   "CASP9"    "PREX1"   
##  [91] "AXL"      "PTK2"     "CDKN2A"   "CAV1"     "MSH2"     "CASP3"   
##  [97] "CCNE1"    "MAPK9"    "ANXA1"    "TFF1"     "TP53"     "YAP1"    
## [103] "XBP1"     "ANXA7"    "ASNS"     "EEF2"     "EIF4EBP1" "FOXM1"   
## [109] "FN1"      "GAPDH"    "MSH6"     "IGFBP2"   "SMAD3"    "SMAD4"   
## [115] "PRDX1"    "SERPINE1" "PIK3CA"   "MAPK3"    "RET"      "RPS6"    
## [121] "RPS6KB1"  "TFRC"     "VASP"     "XRCC1"    "RAB11A"   "SQSTM1"  
## [127] "GAB2"     "WWTR1"    "ANLN"     "DIABLO"   "NEK7"     "RICTOR"  
## [133] "PTCH1"    "TP53BP1"  "FASN"     "BRAF"     "LCN2"     "RAD50"   
## 
## $all.min.0
##   [1] "ESR1"     "AKT2"     "BAP1"     "ERRFI1"   "MET"      "PTEN"    
##   [7] "NOTCH1"   "G6PD"     "BCL2"     "KIT"      "NCOA3"    "ERBB2"   
##  [13] "ERBB3"    "NF2"      "KRAS"     "NRAS"     "RB1"      "ADAR"    
##  [19] "PDCD4"    "MYH9"     "CCND1"    "CDKN1A"   "CDKN1B"   "IRS1"    
##  [25] "MYC"      "EGFR"     "JUN"      "PIK3R1"   "NOTCH3"   "BCL2L11" 
##  [31] "EZH2"     "PIK3R2"   "RAF1"     "PTGS2"    "ETS1"     "STMN1"   
##  [37] "SHC1"     "FOXO3"    "YWHAZ"    "AKT1"     "BCL2L1"   "ATM"     
##  [43] "STAT5A"   "STAT3"    "PARP1"    "XIAP"     "AR"       "CASP8"   
##  [49] "CDK1"     "CHEK1"    "CTNNB1"   "DVL3"     "EEF2"     "EIF4E"   
##  [55] "EIF4G1"   "GSK3B"    "IGF1R"    "ITGA2"    "MAPT"     "YBX1"    
##  [61] "PRKAA1"   "PRKCA"    "MAPK1"    "MAPK8"    "PXN"      "RAD51"   
##  [67] "SRSF1"    "TFRC"     "YWHAE"    "ARID1A"   "BECN1"    "PEA15"   
##  [73] "CCNE2"    "TUBA1B"   "NDRG1"    "EEF2K"    "DIABLO"   "AKT1S1"  
##  [79] "BID"      "ERCC1"    "CHEK2"    "MYH11"    "INPP4B"   "YWHAB"   
##  [85] "PRKCD"    "RAB25"    "PRRT2"    "MACC1"    "ACACA"    "SMAD1"   
##  [91] "E2F1"     "HSPA1A"   "PREX1"    "AXL"      "PTK2"     "CAV1"    
##  [97] "MSH2"     "CASP3"    "CCNE1"    "ANXA1"    "TFF1"     "YAP1"    
## [103] "ANXA7"    "ASNS"     "EIF4EBP1" "FOXM1"    "FN1"      "GAPDH"   
## [109] "MSH6"     "IGFBP2"   "SMAD4"    "PRDX1"    "SERPINE1" "PIK3CA"  
## [115] "RET"      "RPS6"     "RPS6KB1"  "XRCC1"    "RAB11A"   "SQSTM1"  
## [121] "GAB2"     "WWTR1"    "ANLN"     "NEK7"     "RICTOR"   "TP53BP1" 
## [127] "FASN"     "BRAF"     "LCN2"     "RAD50"    "SYP"      "TGM2"    
## [133] "COL6A1"   "CDH2"     "DIRAS3"   "CTNNA1"   "GATA3"    "TTF1"    
## [139] "RBM15"    "TSC1"     "VHL"      "ACVRL1"  
## 
## $all.min.1
##   [1] "ESR1"     "MET"      "BAP1"     "ERRFI1"   "AKT2"     "PTEN"    
##   [7] "G6PD"     "BCL2"     "KIT"      "NCOA3"    "ERBB3"    "KRAS"    
##  [13] "NRAS"     "RB1"      "ADAR"     "PDCD4"    "MYH9"     "CCND1"   
##  [19] "CDKN1A"   "CDKN1B"   "IRS1"     "MYC"      "EGFR"     "JUN"     
##  [25] "PIK3R1"   "NOTCH3"   "BCL2L11"  "EZH2"     "PIK3R2"   "RAF1"    
##  [31] "PTGS2"    "ETS1"     "STMN1"    "SHC1"     "FOXO3"    "YWHAZ"   
##  [37] "AKT1"     "BCL2L1"   "STAT5A"   "STAT3"    "PARP1"    "XIAP"    
##  [43] "AR"       "CHEK1"    "DVL3"     "EIF4E"    "GSK3B"    "IGF1R"   
##  [49] "ITGA2"    "MAPT"     "YBX1"     "PRKAA1"   "PRKCA"    "MAPK1"   
##  [55] "MAPK8"    "PXN"      "RAD51"    "SRSF1"    "YWHAE"    "ARID1A"  
##  [61] "PEA15"    "CCNE2"    "TUBA1B"   "EEF2K"    "AKT1S1"   "BID"     
##  [67] "ERCC1"    "CHEK2"    "MYH11"    "YWHAB"    "PRKCD"    "RAB25"   
##  [73] "PRRT2"    "ACACA"    "E2F1"     "HSPA1A"   "CASP9"    "AXL"     
##  [79] "PTK2"     "CDKN2A"   "CAV1"     "MSH2"     "CASP3"    "CCNE1"   
##  [85] "MAPK9"    "ANXA1"    "TFF1"     "YAP1"     "ASNS"     "CDK1"    
##  [91] "CTNNB1"   "EEF2"     "EIF4EBP1" "EIF4G1"   "FOXM1"    "FN1"     
##  [97] "GAPDH"    "MSH6"     "IGFBP2"   "SMAD3"    "SMAD4"    "PRDX1"   
## [103] "PIK3CA"   "MAPK3"    "RET"      "RPS6"     "RPS6KB1"  "TFRC"    
## [109] "XRCC1"    "RAB11A"   "SQSTM1"   "GAB2"     "NDRG1"    "WWTR1"   
## [115] "ANLN"     "DIABLO"   "NEK7"     "RICTOR"   "INPP4B"   "TP53BP1" 
## [121] "FASN"     "BRAF"     "LCN2"     "RAD50"    "SYP"      "CDH2"    
## [127] "COL6A1"   "SERPINE1" "TGM2"     "GATA3"    "ATM"      "RBM15"   
## [133] "VHL"      "NF2"      "TSC1"     "PREX1"    "TTF1"    
## 
## $all.6.0
##   [1] "ESR1"     "AKT2"     "BAP1"     "ERRFI1"   "MET"      "PTEN"    
##   [7] "NOTCH1"   "G6PD"     "MAPK14"   "BCL2"     "KIT"      "NCOA3"   
##  [13] "ERBB2"    "ERBB3"    "NF2"      "KRAS"     "NRAS"     "RB1"     
##  [19] "ADAR"     "PDCD4"    "MYH9"     "PTK2"     "CCND1"    "CDKN1A"  
##  [25] "CDKN1B"   "IRS1"     "MYC"      "EGFR"     "JUN"      "PIK3R1"  
##  [31] "NOTCH3"   "BCL2L11"  "EZH2"     "PIK3R2"   "RAF1"     "PTGS2"   
##  [37] "ETS1"     "STMN1"    "SHC1"     "FOXO3"    "YWHAZ"    "AKT1"    
##  [43] "BCL2L1"   "ATM"      "STAT5A"   "STAT3"    "PARP1"    "XIAP"    
##  [49] "AR"       "CASP8"    "CDK1"     "CHEK1"    "CTNNB1"   "DVL3"    
##  [55] "EEF2"     "EIF4E"    "EIF4G1"   "GSK3B"    "IGF1R"    "ITGA2"   
##  [61] "MAPT"     "YBX1"     "PRKAA1"   "PRKCA"    "MAPK1"    "MAPK8"   
##  [67] "PXN"      "RAD51"    "SRSF1"    "TFRC"     "YWHAE"    "ARID1A"  
##  [73] "BECN1"    "PEA15"    "CCNE2"    "TUBA1B"   "NDRG1"    "EEF2K"   
##  [79] "DIABLO"   "AKT1S1"   "BID"      "ERCC1"    "CHEK2"    "MYH11"   
##  [85] "INPP4B"   "YWHAB"    "RAB11B"   "PRKCD"    "RAB25"    "PRRT2"   
##  [91] "MACC1"    "ACACA"    "SMAD1"    "E2F1"     "HSPA1A"   "PREX1"   
##  [97] "AXL"      "CAV1"     "MSH2"     "CASP3"    "CCNE1"    "ANXA1"   
## [103] "TFF1"     "YAP1"     "CDH1"     "ANXA7"    "ASNS"     "EIF4EBP1"
## [109] "FOXM1"    "FN1"      "GAPDH"    "MSH6"     "IGFBP2"   "SMAD4"   
## [115] "NFE2L2"   "PRDX1"    "SERPINE1" "PIK3CA"   "RET"      "RPS6"    
## [121] "RPS6KB1"  "XRCC1"    "RAB11A"   "SQSTM1"   "GAB2"     "WWTR1"   
## [127] "ANLN"     "NEK7"     "RICTOR"   "TSC2"     "TP53BP1"  "FASN"    
## [133] "BRAF"     "LCN2"     "RAD50"    "TGM2"     "SYP"      "COL6A1"  
## [139] "DIRAS3"   "CTNNA1"   "CDH2"     "RBM3"     "GATA3"    "TTF1"    
## [145] "RBM15"    "TSC1"     "VHL"      "ACVRL1"  
## 
## $all.6.1
##   [1] "ESR1"     "AKT2"     "BAP1"     "ERRFI1"   "MET"      "PTEN"    
##   [7] "NOTCH1"   "G6PD"     "BCL2"     "KIT"      "NCOA3"    "ERBB3"   
##  [13] "HSPA1A"   "KRAS"     "NRAS"     "RB1"      "ADAR"     "PDCD4"   
##  [19] "MYH9"     "PTK2"     "CCND1"    "CDKN1A"   "CDKN1B"   "IRS1"    
##  [25] "MYC"      "EGFR"     "JUN"      "PIK3R1"   "NOTCH3"   "BCL2L11" 
##  [31] "EZH2"     "PIK3R2"   "RAF1"     "PTGS2"    "ETS1"     "STMN1"   
##  [37] "SHC1"     "FOXO3"    "YWHAZ"    "AKT1"     "VHL"      "BCL2L1"  
##  [43] "ATM"      "STAT5A"   "STAT3"    "PARP1"    "XIAP"     "AR"      
##  [49] "CASP8"    "CDK1"     "CHEK1"    "CTNNB1"   "DVL3"     "EIF4E"   
##  [55] "EIF4G1"   "MTOR"     "GSK3B"    "IGF1R"    "ITGA2"    "MAPT"    
##  [61] "YBX1"     "PRKAA1"   "PRKCA"    "MAPK1"    "MAPK8"    "PXN"     
##  [67] "RAD51"    "SRSF1"    "YWHAE"    "ARID1A"   "BECN1"    "PEA15"   
##  [73] "CCNE2"    "TUBA1B"   "NDRG1"    "EEF2K"    "AKT1S1"   "BID"     
##  [79] "ERCC1"    "CHEK2"    "MYH11"    "INPP4B"   "YWHAB"    "RAB11B"  
##  [85] "PRKCD"    "RAB25"    "PRRT2"    "MACC1"    "ACACA"    "E2F1"    
##  [91] "CASP9"    "PREX1"    "AXL"      "CDKN2A"   "CAV1"     "MSH2"    
##  [97] "CASP3"    "CCNE1"    "MAPK9"    "ANXA1"    "TFF1"     "YAP1"    
## [103] "CDH1"     "ANXA7"    "ASNS"     "EEF2"     "EIF4EBP1" "FOXM1"   
## [109] "FN1"      "GAPDH"    "MSH6"     "IGFBP2"   "SMAD3"    "SMAD4"   
## [115] "PRDX1"    "SERPINE1" "PIK3CA"   "MAPK3"    "RET"      "RPS6"    
## [121] "RPS6KB1"  "TFRC"     "XRCC1"    "RAB11A"   "SQSTM1"   "GAB2"    
## [127] "WWTR1"    "ANLN"     "DIABLO"   "NEK7"     "RICTOR"   "TP53BP1" 
## [133] "FASN"     "BRAF"     "LCN2"     "RAD50"    "SYP"      "COL6A1"  
## [139] "CDH2"     "TGM2"     "DIRAS3"   "GATA3"    "RBM15"    "TSC1"    
## [145] "NF2"      "TTF1"     "XBP1"
saveRDS(geneNames, file = "data/sel_features/gene_converted/genes_ggm.rds")

2. Pathway Analysis

A. GO Classification

ggo_MF <- list()#functional profile of a geneset for Molecular Function
ggo_BP <- list()#functional profile of a geneset for Biological Process
ggo_CC <- list()#functional profile of a geneset for Cellular Component


for(z in 1:length(geneNames)){
  print(z)
  input <- geneNames[[z]]

  ggo_MF[[z]] <- groupGO(gene=input,
    OrgDb = org.Hs.eg.db,
    ont="MF",
    keyType="SYMBOL",
    readable=TRUE)
  
  ggo_BP[[z]] <- groupGO(gene=input,
    OrgDb = org.Hs.eg.db,
    ont="BP",
    keyType="SYMBOL",
    readable=TRUE)

  ggo_CC[[z]] <- groupGO(gene=input,
    OrgDb = org.Hs.eg.db,
    ont="CC",
    keyType="SYMBOL",
    readable=TRUE)    
}
## [1] 1
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 7
## [1] 8
## [1] 9
## [1] 10
## [1] 11
## [1] 12
## [1] 13
## [1] 14
## [1] 15
## [1] 16
## [1] 17
## [1] 18
## [1] 19
## [1] 20
## [1] 21
for(z in 1:length(geneNames)) {
  print(head(ggo_MF[[z]]))
  print(head(ggo_BP[[z]]))
  print(head(ggo_CC[[z]]))
}
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1      1/14
## GO:0003824 GO:0003824           catalytic activity     7      7/14
## GO:0005198 GO:0005198 structural molecule activity     1      1/14
## GO:0005215 GO:0005215         transporter activity     0      0/14
## GO:0005488 GO:0005488                      binding    14     14/14
## GO:0009055 GO:0009055   electron transfer activity     0      0/14
##                                                                              geneID
## GO:0003774                                                                    MYH11
## GO:0003824                                       GAPDH/FASN/ATM/G6PD/PTEN/MSH6/MSH2
## GO:0005198                                                                    MYH11
## GO:0005215                                                                         
## GO:0005488 IGFBP2/PDCD4/GAPDH/FASN/MYH11/TFRC/GATA3/ATM/TTF1/G6PD/AR/PTEN/MSH6/MSH2
## GO:0009055                                                                         
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction     7      7/14
## GO:0002376 GO:0002376 immune system process     8      8/14
## GO:0008152 GO:0008152     metabolic process    12     12/14
## GO:0009987 GO:0009987      cellular process    14     14/14
## GO:0016032 GO:0016032         viral process     1      1/14
## GO:0022414 GO:0022414  reproductive process     7      7/14
##                                                                              geneID
## GO:0000003                                       IGFBP2/GATA3/ATM/AR/PTEN/MSH6/MSH2
## GO:0002376                               IGFBP2/GAPDH/TFRC/GATA3/ATM/G6PD/MSH6/MSH2
## GO:0008152              PDCD4/GAPDH/FASN/TFRC/GATA3/ATM/TTF1/G6PD/AR/PTEN/MSH6/MSH2
## GO:0009987 IGFBP2/PDCD4/GAPDH/FASN/MYH11/TFRC/GATA3/ATM/TTF1/G6PD/AR/PTEN/MSH6/MSH2
## GO:0016032                                                                     TFRC
## GO:0022414                                       IGFBP2/GATA3/ATM/AR/PTEN/MSH6/MSH2
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex     8      8/14
## GO:0044423 GO:0044423           virion component     0      0/14
## GO:0110165 GO:0110165 cellular anatomical entity    14     14/14
##                                                                              geneID
## GO:0032991                                  GAPDH/MYH11/TFRC/GATA3/ATM/AR/MSH6/MSH2
## GO:0044423                                                                         
## GO:0110165 IGFBP2/PDCD4/GAPDH/FASN/MYH11/TFRC/GATA3/ATM/TTF1/G6PD/AR/PTEN/MSH6/MSH2
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1      1/46
## GO:0003824 GO:0003824           catalytic activity    17     17/46
## GO:0005198 GO:0005198 structural molecule activity     5      5/46
## GO:0005215 GO:0005215         transporter activity     0      0/46
## GO:0005488 GO:0005488                      binding    46     46/46
## GO:0009055 GO:0009055   electron transfer activity     0      0/46
##                                                                                                                                                                                                                                                                                        geneID
## GO:0003774                                                                                                                                                                                                                                                                               MYH9
## GO:0003824                                                                                                                                                                                 GAPDH/EEF2/HSPA1A/TGM2/CCND1/FASN/PRKCA/PIK3R1/TUBA1B/G6PD/CDKN1A/ADAR/RAB11A/PARP1/KDR/CDK1/IDH3A
## GO:0005198                                                                                                                                                                                                                                                      FN1/RPS6/TUBA1B/COL6A1/CTNNA1
## GO:0005215                                                                                                                                                                                                                                                                                   
## GO:0005488 GAPDH/SQSTM1/FN1/EEF2/HSPA1A/IGFBP2/RPS6/SYP/CTNNB1/TGM2/CDH2/CCND1/FASN/SERPINE1/PRKCA/PIK3R1/TUBA1B/COL6A1/G6PD/CDKN1A/PEA15/CTNNA1/PDCD4/NDRG1/ERBB3/ANXA1/ADAR/TFRC/YWHAZ/YWHAB/PXN/ERRFI1/EIF4G1/STMN1/PIK3R2/ITGA2/MYH9/YWHAE/RAB11A/PARP1/KDR/CDK1/BCL2L1/CCNB1/PREX1/IDH3A
## GO:0009055                                                                                                                                                                                                                                                                                   
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    11     11/46
## GO:0002376 GO:0002376 immune system process    22     22/46
## GO:0008152 GO:0008152     metabolic process    35     35/46
## GO:0009987 GO:0009987      cellular process    46     46/46
## GO:0016032 GO:0016032         viral process     5      5/46
## GO:0022414 GO:0022414  reproductive process    11     11/46
##                                                                                                                                                                                                                                                                                        geneID
## GO:0000003                                                                                                                                                                                                                IGFBP2/CTNNB1/COL6A1/CTNNA1/ERRFI1/ITGA2/MYH9/PARP1/KDR/CDK1/BCL2L1
## GO:0002376                                                                                                                                            GAPDH/SQSTM1/FN1/HSPA1A/IGFBP2/CTNNB1/SERPINE1/PRKCA/PIK3R1/G6PD/CDKN1A/NDRG1/ANXA1/ADAR/TFRC/YWHAZ/PIK3R2/ITGA2/MYH9/YWHAE/PARP1/PREX1
## GO:0008152                                                                   GAPDH/SQSTM1/FN1/EEF2/HSPA1A/RPS6/CTNNB1/TGM2/CCND1/FASN/SERPINE1/PRKCA/PIK3R1/COL6A1/G6PD/CDKN1A/PDCD4/ERBB3/ANXA1/ADAR/TFRC/YWHAZ/YWHAB/ERRFI1/EIF4G1/PIK3R2/ITGA2/MYH9/YWHAE/PARP1/KDR/CDK1/CCNB1/PREX1/IDH3A
## GO:0009987 GAPDH/SQSTM1/FN1/EEF2/HSPA1A/IGFBP2/RPS6/SYP/CTNNB1/TGM2/CDH2/CCND1/FASN/SERPINE1/PRKCA/PIK3R1/TUBA1B/COL6A1/G6PD/CDKN1A/PEA15/CTNNA1/PDCD4/NDRG1/ERBB3/ANXA1/ADAR/TFRC/YWHAZ/YWHAB/PXN/ERRFI1/EIF4G1/STMN1/PIK3R2/ITGA2/MYH9/YWHAE/RAB11A/PARP1/KDR/CDK1/BCL2L1/CCNB1/PREX1/IDH3A
## GO:0016032                                                                                                                                                                                                                                                        HSPA1A/ADAR/TFRC/ITGA2/CDK1
## GO:0022414                                                                                                                                                                                                                IGFBP2/CTNNB1/COL6A1/CTNNA1/ERRFI1/ITGA2/MYH9/PARP1/KDR/CDK1/BCL2L1
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    31     31/46
## GO:0044423 GO:0044423           virion component     0      0/46
## GO:0110165 GO:0110165 cellular anatomical entity    46     46/46
##                                                                                                                                                                                                                                                                                        geneID
## GO:0032991                                                                                           GAPDH/FN1/EEF2/HSPA1A/RPS6/CTNNB1/TGM2/CDH2/CCND1/SERPINE1/PRKCA/PIK3R1/COL6A1/CDKN1A/PEA15/CTNNA1/ERBB3/ADAR/TFRC/PXN/EIF4G1/PIK3R2/ITGA2/MYH9/RAB11A/PARP1/KDR/CDK1/BCL2L1/CCNB1/IDH3A
## GO:0044423                                                                                                                                                                                                                                                                                   
## GO:0110165 GAPDH/SQSTM1/FN1/EEF2/HSPA1A/IGFBP2/RPS6/SYP/CTNNB1/TGM2/CDH2/CCND1/FASN/SERPINE1/PRKCA/PIK3R1/TUBA1B/COL6A1/G6PD/CDKN1A/PEA15/CTNNA1/PDCD4/NDRG1/ERBB3/ANXA1/ADAR/TFRC/YWHAZ/YWHAB/PXN/ERRFI1/EIF4G1/STMN1/PIK3R2/ITGA2/MYH9/YWHAE/RAB11A/PARP1/KDR/CDK1/BCL2L1/CCNB1/PREX1/IDH3A
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1      1/55
## GO:0003824 GO:0003824           catalytic activity    21     21/55
## GO:0005198 GO:0005198 structural molecule activity     5      5/55
## GO:0005215 GO:0005215         transporter activity     0      0/55
## GO:0005488 GO:0005488                      binding    55     55/55
## GO:0009055 GO:0009055   electron transfer activity     0      0/55
##                                                                                                                                                                                                                                                                                                                                         geneID
## GO:0003774                                                                                                                                                                                                                                                                                                                                MYH9
## GO:0003824                                                                                                                                                                                                           GAPDH/HSPA1A/EEF2/TGM2/FASN/PIK3R1/G6PD/CDKN1A/PRKCA/CCND1/TUBA1B/ADAR/DIRAS3/AKT2/PRDX1/AKT1/CDK1/PARK7/KDR/RAB11A/PARP1
## GO:0005198                                                                                                                                                                                                                                                                                                       FN1/RPS6/COL6A1/TUBA1B/CTNNA1
## GO:0005215                                                                                                                                                                                                                                                                                                                                    
## GO:0005488 GAPDH/SQSTM1/FN1/HSPA1A/EEF2/IGFBP2/SYP/RPS6/TGM2/CTNNB1/COL6A1/CDH2/FASN/SERPINE1/ERBB3/PIK3R1/G6PD/CDKN1A/PRKCA/CCND1/TUBA1B/PEA15/ANXA1/ADAR/PDCD4/NDRG1/CTNNA1/TFRC/ITGA2/ERRFI1/PIK3R2/PXN/YWHAZ/MYH9/DIRAS3/STMN1/EIF4G1/YWHAE/AKT2/CCNB1/YWHAB/PREX1/PRDX1/AKT1/CDK1/ANLN/SHC1/JUN/PARK7/BCL2L1/KDR/RAB11A/FOXM1/PARP1/ANXA7
## GO:0009055                                                                                                                                                                                                                                                                                                                                    
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    14     14/55
## GO:0002376 GO:0002376 immune system process    25     25/55
## GO:0008152 GO:0008152     metabolic process    43     43/55
## GO:0009987 GO:0009987      cellular process    55     55/55
## GO:0016032 GO:0016032         viral process     7      7/55
## GO:0022414 GO:0022414  reproductive process    14     14/55
##                                                                                                                                                                                                                                                                                                                                         geneID
## GO:0000003                                                                                                                                                                                                                                               IGFBP2/CTNNB1/COL6A1/CTNNA1/ITGA2/ERRFI1/MYH9/DIRAS3/AKT1/CDK1/PARK7/BCL2L1/KDR/PARP1
## GO:0002376                                                                                                                                                                            GAPDH/SQSTM1/FN1/HSPA1A/IGFBP2/CTNNB1/SERPINE1/PIK3R1/G6PD/CDKN1A/PRKCA/ANXA1/ADAR/NDRG1/TFRC/ITGA2/PIK3R2/YWHAZ/MYH9/YWHAE/PREX1/PRDX1/AKT1/PARK7/PARP1
## GO:0008152                                                                        GAPDH/SQSTM1/FN1/HSPA1A/EEF2/RPS6/TGM2/CTNNB1/COL6A1/FASN/SERPINE1/ERBB3/PIK3R1/G6PD/CDKN1A/PRKCA/CCND1/ANXA1/ADAR/PDCD4/TFRC/ITGA2/ERRFI1/PIK3R2/YWHAZ/MYH9/DIRAS3/EIF4G1/YWHAE/AKT2/CCNB1/YWHAB/PREX1/PRDX1/AKT1/CDK1/SHC1/JUN/PARK7/KDR/FOXM1/PARP1/ANXA7
## GO:0009987 GAPDH/SQSTM1/FN1/HSPA1A/EEF2/IGFBP2/SYP/RPS6/TGM2/CTNNB1/COL6A1/CDH2/FASN/SERPINE1/ERBB3/PIK3R1/G6PD/CDKN1A/PRKCA/CCND1/TUBA1B/PEA15/ANXA1/ADAR/PDCD4/NDRG1/CTNNA1/TFRC/ITGA2/ERRFI1/PIK3R2/PXN/YWHAZ/MYH9/DIRAS3/STMN1/EIF4G1/YWHAE/AKT2/CCNB1/YWHAB/PREX1/PRDX1/AKT1/CDK1/ANLN/SHC1/JUN/PARK7/BCL2L1/KDR/RAB11A/FOXM1/PARP1/ANXA7
## GO:0016032                                                                                                                                                                                                                                                                                                HSPA1A/ADAR/TFRC/ITGA2/AKT1/CDK1/JUN
## GO:0022414                                                                                                                                                                                                                                               IGFBP2/CTNNB1/COL6A1/CTNNA1/ITGA2/ERRFI1/MYH9/DIRAS3/AKT1/CDK1/PARK7/BCL2L1/KDR/PARP1
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    35     35/55
## GO:0044423 GO:0044423           virion component     0      0/55
## GO:0110165 GO:0110165 cellular anatomical entity    55     55/55
##                                                                                                                                                                                                                                                                                                                                         geneID
## GO:0032991                                                                                                                        GAPDH/FN1/HSPA1A/EEF2/RPS6/TGM2/CTNNB1/COL6A1/CDH2/SERPINE1/ERBB3/PIK3R1/CDKN1A/PRKCA/CCND1/PEA15/ADAR/CTNNA1/TFRC/ITGA2/PIK3R2/PXN/MYH9/EIF4G1/CCNB1/AKT1/CDK1/SHC1/JUN/PARK7/BCL2L1/KDR/RAB11A/FOXM1/PARP1
## GO:0044423                                                                                                                                                                                                                                                                                                                                    
## GO:0110165 GAPDH/SQSTM1/FN1/HSPA1A/EEF2/IGFBP2/SYP/RPS6/TGM2/CTNNB1/COL6A1/CDH2/FASN/SERPINE1/ERBB3/PIK3R1/G6PD/CDKN1A/PRKCA/CCND1/TUBA1B/PEA15/ANXA1/ADAR/PDCD4/NDRG1/CTNNA1/TFRC/ITGA2/ERRFI1/PIK3R2/PXN/YWHAZ/MYH9/DIRAS3/STMN1/EIF4G1/YWHAE/AKT2/CCNB1/YWHAB/PREX1/PRDX1/AKT1/CDK1/ANLN/SHC1/JUN/PARK7/BCL2L1/KDR/RAB11A/FOXM1/PARP1/ANXA7
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1     1/113
## GO:0003824 GO:0003824           catalytic activity    55    55/113
## GO:0005198 GO:0005198 structural molecule activity     3     3/113
## GO:0005215 GO:0005215         transporter activity     2     2/113
## GO:0005488 GO:0005488                      binding   113   113/113
## GO:0009055 GO:0009055   electron transfer activity     0     0/113
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          geneID
## GO:0003774                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 MYH9
## GO:0003824                                                                                                                                                                                                                                                                                                                                                MET/BAP1/AKT2/PTEN/G6PD/KIT/NCOA3/KRAS/NRAS/PTK2/CCND1/CDKN1A/EGFR/PIK3R1/EZH2/RAF1/PTGS2/AKT1/ATM/PARP1/XIAP/CASP8/CHEK1/GSK3B/IGF1R/PRKAA1/MAPK8/TUBA1B/CHEK2/PRKCD/RAB25/ACACA/HSPA1A/ADAR/AXL/MSH2/CASP3/CCNE1/ASNS/EEF2/GAPDH/MSH6/PRDX1/PIK3CA/PRKCA/MAPK1/RET/RPS6KB1/RAB11A/NEK7/ERCC1/INPP4B/FASN/BRAF/RAD50
## GO:0005198                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TUBA1B/FN1/RPS6
## GO:0005215                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           BCL2/IGF1R
## GO:0005488 ESR1/MET/BAP1/ERRFI1/AKT2/PTEN/G6PD/BCL2/KIT/NCOA3/ERBB3/NF2/KRAS/NRAS/RB1/PDCD4/MYH9/PTK2/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/CASP8/CHEK1/DVL3/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/MAPK8/PXN/SRSF1/YWHAE/ARID1A/PEA15/CCNE2/TUBA1B/BID/CHEK2/PRKCD/RAB25/PRRT2/MACC1/ACACA/E2F1/HSPA1A/ADAR/AXL/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ASNS/CTNNB1/EEF2/EIF4E/EIF4EBP1/EIF4G1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/PRDX1/PIK3CA/PRKCA/MAPK1/RET/RPS6/RPS6KB1/TFRC/RAB11A/SQSTM1/GAB2/NDRG1/WWTR1/ANLN/DIABLO/NEK7/RICTOR/ERCC1/INPP4B/TP53BP1/FASN/BRAF/LCN2/RAD50
## GO:0009055                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    32    32/113
## GO:0002376 GO:0002376 immune system process    58    58/113
## GO:0008152 GO:0008152     metabolic process    99    99/113
## GO:0009987 GO:0009987      cellular process   113   113/113
## GO:0016032 GO:0016032         viral process    11    11/113
## GO:0022414 GO:0022414  reproductive process    31    31/113
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          geneID
## GO:0000003                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ESR1/ERRFI1/PTEN/BCL2/KIT/RB1/MYH9/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/BCL2L1/ATM/STAT3/PARP1/CASP8/IGF1R/ITGA2/CCNE2/AXL/MSH2/CASP3/CCNE1/CTNNB1/MSH6/IGFBP2/PIK3CA/RPS6KB1/ERCC1/RAD50
## GO:0002376                                                                                                                                                                                                                                                                                                                                 ESR1/BAP1/G6PD/BCL2/KIT/RB1/MYH9/PTK2/CDKN1A/MYC/PIK3R1/BCL2L11/EZH2/RAF1/ETS1/FOXO3/YWHAZ/AKT1/ATM/STAT3/PARP1/XIAP/CASP8/IGF1R/ITGA2/MAPT/MAPK8/YWHAE/ARID1A/BID/PRKCD/HSPA1A/ADAR/AXL/CAV1/MSH2/CASP3/ANXA1/CTNNB1/FN1/GAPDH/MSH6/IGFBP2/PRDX1/PIK3CA/PRKCA/MAPK1/RET/RPS6KB1/TFRC/SQSTM1/GAB2/NDRG1/NEK7/ERCC1/TP53BP1/BRAF/LCN2
## GO:0008152                                                                                      ESR1/MET/BAP1/ERRFI1/AKT2/PTEN/G6PD/BCL2/KIT/NCOA3/ERBB3/NF2/KRAS/RB1/PDCD4/MYH9/PTK2/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/EZH2/RAF1/PTGS2/ETS1/SHC1/FOXO3/YWHAZ/AKT1/ATM/STAT5A/STAT3/PARP1/XIAP/CASP8/CHEK1/DVL3/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/MAPK8/SRSF1/YWHAE/ARID1A/CCNE2/BID/CHEK2/PRKCD/MACC1/ACACA/E2F1/HSPA1A/ADAR/AXL/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ASNS/CTNNB1/EEF2/EIF4E/EIF4EBP1/EIF4G1/FOXM1/FN1/GAPDH/MSH6/PRDX1/PIK3CA/PRKCA/MAPK1/RET/RPS6/RPS6KB1/TFRC/SQSTM1/WWTR1/DIABLO/NEK7/RICTOR/ERCC1/INPP4B/TP53BP1/FASN/BRAF/LCN2/RAD50
## GO:0009987 ESR1/MET/BAP1/ERRFI1/AKT2/PTEN/G6PD/BCL2/KIT/NCOA3/ERBB3/NF2/KRAS/NRAS/RB1/PDCD4/MYH9/PTK2/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/CASP8/CHEK1/DVL3/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/MAPK8/PXN/SRSF1/YWHAE/ARID1A/PEA15/CCNE2/TUBA1B/BID/CHEK2/PRKCD/RAB25/PRRT2/MACC1/ACACA/E2F1/HSPA1A/ADAR/AXL/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ASNS/CTNNB1/EEF2/EIF4E/EIF4EBP1/EIF4G1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/PRDX1/PIK3CA/PRKCA/MAPK1/RET/RPS6/RPS6KB1/TFRC/RAB11A/SQSTM1/GAB2/NDRG1/WWTR1/ANLN/DIABLO/NEK7/RICTOR/ERCC1/INPP4B/TP53BP1/FASN/BRAF/LCN2/RAD50
## GO:0016032                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             BCL2/EGFR/JUN/AKT1/GSK3B/ITGA2/HSPA1A/ADAR/AXL/CAV1/TFRC
## GO:0022414                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ESR1/ERRFI1/PTEN/BCL2/KIT/RB1/MYH9/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/BCL2L1/ATM/PARP1/CASP8/IGF1R/ITGA2/CCNE2/AXL/MSH2/CASP3/CCNE1/CTNNB1/MSH6/IGFBP2/PIK3CA/RPS6KB1/ERCC1/RAD50
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    73    73/113
## GO:0044423 GO:0044423           virion component     0     0/113
## GO:0110165 GO:0110165 cellular anatomical entity   113   113/113
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          geneID
## GO:0032991                                                                                                                                                                                                                                       ESR1/MET/BAP1/BCL2/KIT/NCOA3/ERBB3/RB1/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PTGS2/ETS1/SHC1/FOXO3/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/CASP8/CHEK1/DVL3/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PXN/SRSF1/ARID1A/PEA15/CCNE2/E2F1/HSPA1A/ADAR/AXL/CAV1/MSH2/CASP3/CCNE1/YAP1/CTNNB1/EEF2/EIF4E/EIF4G1/FOXM1/FN1/GAPDH/MSH6/PIK3CA/PRKCA/RET/RPS6/TFRC/RAB11A/WWTR1/DIABLO/RICTOR/ERCC1/TP53BP1/RAD50
## GO:0044423                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
## GO:0110165 ESR1/MET/BAP1/ERRFI1/AKT2/PTEN/G6PD/BCL2/KIT/NCOA3/ERBB3/NF2/KRAS/NRAS/RB1/PDCD4/MYH9/PTK2/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/CASP8/CHEK1/DVL3/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/MAPK8/PXN/SRSF1/YWHAE/ARID1A/PEA15/CCNE2/TUBA1B/BID/CHEK2/PRKCD/RAB25/PRRT2/MACC1/ACACA/E2F1/HSPA1A/ADAR/AXL/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ASNS/CTNNB1/EEF2/EIF4E/EIF4EBP1/EIF4G1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/PRDX1/PIK3CA/PRKCA/MAPK1/RET/RPS6/RPS6KB1/TFRC/RAB11A/SQSTM1/GAB2/NDRG1/WWTR1/ANLN/DIABLO/NEK7/RICTOR/ERCC1/INPP4B/TP53BP1/FASN/BRAF/LCN2/RAD50
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     2     2/125
## GO:0003824 GO:0003824           catalytic activity    60    60/125
## GO:0005198 GO:0005198 structural molecule activity     4     4/125
## GO:0005215 GO:0005215         transporter activity     2     2/125
## GO:0005488 GO:0005488                      binding   125   125/125
## GO:0009055 GO:0009055   electron transfer activity     0     0/125
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 geneID
## GO:0003774                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  MYH9/MYH11
## GO:0003824                                                                                                                                                                                                                                                                                                                                                                                             AKT2/BAP1/MET/PTEN/G6PD/KIT/NCOA3/HSPA1A/KRAS/NRAS/ADAR/PTK2/CCND1/CDKN1A/EGFR/PIK3R1/EZH2/RAF1/PTGS2/AKT1/VHL/ATM/PARP1/XIAP/CASP8/CDK1/CHEK1/MTOR/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/MAPK8/TUBA1B/EEF2K/CHEK2/PRKCD/RAB25/ACACA/AXL/MSH2/CASP3/CCNE1/ASNS/EEF2/GAPDH/MSH6/PRDX1/PIK3CA/RET/RPS6KB1/XRCC1/RAB11A/NEK7/ERCC1/INPP4B/FASN/BRAF/RAD50
## GO:0005198                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TUBA1B/MYH11/FN1/RPS6
## GO:0005215                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  BCL2/IGF1R
## GO:0005488 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB3/NF2/HSPA1A/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/PTK2/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/VHL/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/CASP8/CDK1/CHEK1/CTNNB1/DVL3/MTOR/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/SRSF1/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/EEF2K/AKT1S1/BID/CHEK2/MYH11/YWHAB/PRKCD/RAB25/PRRT2/MACC1/ACACA/E2F1/AXL/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ASNS/EEF2/EIF4E/EIF4EBP1/EIF4G1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD4/PRDX1/PIK3CA/RET/RPS6/RPS6KB1/TFRC/XRCC1/RAB11A/SQSTM1/GAB2/NDRG1/WWTR1/ANLN/DIABLO/NEK7/RICTOR/ERCC1/INPP4B/TP53BP1/FASN/BRAF/LCN2/RAD50
## GO:0009055                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    36    36/125
## GO:0002376 GO:0002376 immune system process    62    62/125
## GO:0008152 GO:0008152     metabolic process   110   110/125
## GO:0009987 GO:0009987      cellular process   125   125/125
## GO:0016032 GO:0016032         viral process    14    14/125
## GO:0022414 GO:0022414  reproductive process    35    35/125
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 geneID
## GO:0000003                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ESR1/ERRFI1/PTEN/NOTCH1/BCL2/KIT/RB1/MYH9/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/BCL2L1/ATM/STAT3/PARP1/CASP8/CDK1/CTNNB1/MTOR/IGF1R/ITGA2/CCNE2/AXL/MSH2/CASP3/CCNE1/MSH6/IGFBP2/SMAD4/PIK3CA/RPS6KB1/ERCC1/RAD50
## GO:0002376                                                                                                                                                                                                                                                                                                                                                                               ESR1/BAP1/NOTCH1/G6PD/BCL2/KIT/HSPA1A/RB1/ADAR/MYH9/PTK2/CDKN1A/MYC/PIK3R1/BCL2L11/EZH2/PIK3R2/RAF1/ETS1/FOXO3/YWHAZ/AKT1/ATM/STAT3/PARP1/XIAP/CASP8/CTNNB1/MTOR/IGF1R/ITGA2/MAPT/PRKCA/MAPK1/MAPK8/YWHAE/ARID1A/BECN1/BID/PRKCD/AXL/CAV1/MSH2/CASP3/ANXA1/FN1/GAPDH/MSH6/IGFBP2/PRDX1/PIK3CA/RET/RPS6KB1/TFRC/SQSTM1/GAB2/NDRG1/NEK7/ERCC1/TP53BP1/BRAF/LCN2
## GO:0008152                                                                                            ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB3/NF2/HSPA1A/KRAS/RB1/ADAR/PDCD4/MYH9/PTK2/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/EZH2/PIK3R2/RAF1/PTGS2/ETS1/SHC1/FOXO3/YWHAZ/AKT1/VHL/ATM/STAT5A/STAT3/PARP1/XIAP/CASP8/CDK1/CHEK1/CTNNB1/DVL3/MTOR/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/SRSF1/YWHAE/ARID1A/BECN1/CCNE2/EEF2K/AKT1S1/BID/CHEK2/YWHAB/PRKCD/MACC1/ACACA/E2F1/AXL/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ASNS/EEF2/EIF4E/EIF4EBP1/EIF4G1/FOXM1/FN1/GAPDH/MSH6/SMAD4/PRDX1/PIK3CA/RET/RPS6/RPS6KB1/TFRC/XRCC1/SQSTM1/WWTR1/DIABLO/NEK7/RICTOR/ERCC1/INPP4B/TP53BP1/FASN/BRAF/LCN2/RAD50
## GO:0009987 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB3/NF2/HSPA1A/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/PTK2/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/VHL/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/CASP8/CDK1/CHEK1/CTNNB1/DVL3/MTOR/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/SRSF1/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/EEF2K/AKT1S1/BID/CHEK2/MYH11/YWHAB/PRKCD/RAB25/PRRT2/MACC1/ACACA/E2F1/AXL/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ASNS/EEF2/EIF4E/EIF4EBP1/EIF4G1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD4/PRDX1/PIK3CA/RET/RPS6/RPS6KB1/TFRC/XRCC1/RAB11A/SQSTM1/GAB2/NDRG1/WWTR1/ANLN/DIABLO/NEK7/RICTOR/ERCC1/INPP4B/TP53BP1/FASN/BRAF/LCN2/RAD50
## GO:0016032                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  NOTCH1/BCL2/HSPA1A/ADAR/EGFR/JUN/AKT1/CDK1/GSK3B/ITGA2/BECN1/AXL/CAV1/TFRC
## GO:0022414                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ESR1/ERRFI1/PTEN/NOTCH1/BCL2/KIT/RB1/MYH9/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/BCL2L1/ATM/PARP1/CASP8/CDK1/CTNNB1/MTOR/IGF1R/ITGA2/CCNE2/AXL/MSH2/CASP3/CCNE1/MSH6/IGFBP2/SMAD4/PIK3CA/RPS6KB1/ERCC1/RAD50
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    82    82/125
## GO:0044423 GO:0044423           virion component     0     0/125
## GO:0110165 GO:0110165 cellular anatomical entity   125   125/125
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 geneID
## GO:0032991                                                                                                                                                                                                                                                       ESR1/BAP1/MET/NOTCH1/BCL2/KIT/NCOA3/ERBB3/HSPA1A/RB1/ADAR/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/PTGS2/ETS1/SHC1/FOXO3/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/CASP8/CDK1/CHEK1/CTNNB1/DVL3/MTOR/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/PXN/SRSF1/ARID1A/BECN1/PEA15/CCNE2/AKT1S1/MYH11/E2F1/AXL/CAV1/MSH2/CASP3/CCNE1/YAP1/EEF2/EIF4E/EIF4G1/FOXM1/FN1/GAPDH/MSH6/SMAD4/PIK3CA/RET/RPS6/TFRC/XRCC1/RAB11A/WWTR1/DIABLO/RICTOR/ERCC1/TP53BP1/RAD50
## GO:0044423                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
## GO:0110165 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB3/NF2/HSPA1A/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/PTK2/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/VHL/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/CASP8/CDK1/CHEK1/CTNNB1/DVL3/MTOR/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/SRSF1/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/EEF2K/AKT1S1/BID/CHEK2/MYH11/YWHAB/PRKCD/RAB25/PRRT2/MACC1/ACACA/E2F1/AXL/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ASNS/EEF2/EIF4E/EIF4EBP1/EIF4G1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD4/PRDX1/PIK3CA/RET/RPS6/RPS6KB1/TFRC/XRCC1/RAB11A/SQSTM1/GAB2/NDRG1/WWTR1/ANLN/DIABLO/NEK7/RICTOR/ERCC1/INPP4B/TP53BP1/FASN/BRAF/LCN2/RAD50
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     2     2/140
## GO:0003824 GO:0003824           catalytic activity    63    63/140
## GO:0005198 GO:0005198 structural molecule activity     6     6/140
## GO:0005215 GO:0005215         transporter activity     2     2/140
## GO:0005488 GO:0005488                      binding   140   140/140
## GO:0009055 GO:0009055   electron transfer activity     0     0/140
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          geneID
## GO:0003774                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           MYH9/MYH11
## GO:0003824                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AKT2/BAP1/MET/PTEN/G6PD/KIT/NCOA3/KRAS/NRAS/ADAR/CCND1/CDKN1A/EGFR/PIK3R1/EZH2/RAF1/PTGS2/AKT1/ATM/PARP1/XIAP/CASP8/CDK1/CHEK1/EEF2/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/MAPK8/RAD51/TUBA1B/EEF2K/ERCC1/CHEK2/INPP4B/PRKCD/RAB25/ACACA/HSPA1A/AXL/PTK2/MSH2/CASP3/CCNE1/ASNS/GAPDH/MSH6/PRDX1/PIK3CA/RET/RPS6KB1/XRCC1/RAB11A/NEK7/FASN/BRAF/RAD50/TGM2/DIRAS3/VHL/ACVRL1
## GO:0005198                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TUBA1B/MYH11/FN1/RPS6/COL6A1/CTNNA1
## GO:0005215                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           BCL2/IGF1R
## GO:0005488 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB3/NF2/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/TFRC/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/DIABLO/AKT1S1/BID/ERCC1/CHEK2/MYH11/INPP4B/YWHAB/PRKCD/RAB25/PRRT2/MACC1/ACACA/E2F1/HSPA1A/PREX1/AXL/PTK2/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ANXA7/ASNS/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD4/PRDX1/SERPINE1/PIK3CA/RET/RPS6/RPS6KB1/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50/SYP/TGM2/COL6A1/CDH2/CTNNA1/DIRAS3/GATA3/RBM15/TTF1/VHL/TSC1/ACVRL1
## GO:0009055                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    41    41/140
## GO:0002376 GO:0002376 immune system process    66    66/140
## GO:0008152 GO:0008152     metabolic process   122   122/140
## GO:0009987 GO:0009987      cellular process   140   140/140
## GO:0016032 GO:0016032         viral process    14    14/140
## GO:0022414 GO:0022414  reproductive process    40    40/140
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          geneID
## GO:0000003                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ESR1/ERRFI1/PTEN/NOTCH1/BCL2/KIT/RB1/MYH9/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/BCL2L1/ATM/STAT3/PARP1/AR/CASP8/CDK1/CTNNB1/IGF1R/ITGA2/RAD51/CCNE2/ERCC1/AXL/MSH2/CASP3/CCNE1/MSH6/IGFBP2/SMAD4/PIK3CA/RPS6KB1/RAD50/COL6A1/CTNNA1/DIRAS3/GATA3
## GO:0002376                                                                                                                                                                                                                                                                                                                                                                                                                                             ESR1/BAP1/NOTCH1/G6PD/BCL2/KIT/RB1/ADAR/MYH9/CDKN1A/MYC/PIK3R1/BCL2L11/EZH2/PIK3R2/RAF1/ETS1/FOXO3/YWHAZ/AKT1/ATM/STAT3/PARP1/XIAP/CASP8/CTNNB1/IGF1R/ITGA2/MAPT/PRKCA/MAPK1/MAPK8/TFRC/YWHAE/ARID1A/BECN1/NDRG1/BID/ERCC1/PRKCD/HSPA1A/PREX1/AXL/PTK2/CAV1/MSH2/CASP3/ANXA1/FN1/GAPDH/MSH6/IGFBP2/PRDX1/SERPINE1/PIK3CA/RET/RPS6KB1/SQSTM1/GAB2/NEK7/TP53BP1/BRAF/LCN2/GATA3/RBM15/TSC1
## GO:0008152                                                                                                            ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB3/NF2/KRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/EZH2/PIK3R2/RAF1/PTGS2/ETS1/SHC1/FOXO3/YWHAZ/AKT1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/RAD51/SRSF1/TFRC/YWHAE/ARID1A/BECN1/CCNE2/EEF2K/DIABLO/AKT1S1/BID/ERCC1/CHEK2/INPP4B/YWHAB/PRKCD/MACC1/ACACA/E2F1/HSPA1A/PREX1/AXL/PTK2/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ANXA7/ASNS/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/SMAD4/PRDX1/SERPINE1/PIK3CA/RET/RPS6/RPS6KB1/XRCC1/SQSTM1/WWTR1/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50/TGM2/COL6A1/DIRAS3/GATA3/RBM15/TTF1/VHL/TSC1/ACVRL1
## GO:0009987 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB3/NF2/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/TFRC/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/DIABLO/AKT1S1/BID/ERCC1/CHEK2/MYH11/INPP4B/YWHAB/PRKCD/RAB25/PRRT2/MACC1/ACACA/E2F1/HSPA1A/PREX1/AXL/PTK2/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ANXA7/ASNS/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD4/PRDX1/SERPINE1/PIK3CA/RET/RPS6/RPS6KB1/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50/SYP/TGM2/COL6A1/CDH2/CTNNA1/DIRAS3/GATA3/RBM15/TTF1/VHL/TSC1/ACVRL1
## GO:0016032                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           NOTCH1/BCL2/ADAR/EGFR/JUN/AKT1/CDK1/GSK3B/ITGA2/TFRC/BECN1/HSPA1A/AXL/CAV1
## GO:0022414                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ESR1/ERRFI1/PTEN/NOTCH1/BCL2/KIT/RB1/MYH9/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/BCL2L1/ATM/PARP1/AR/CASP8/CDK1/CTNNB1/IGF1R/ITGA2/RAD51/CCNE2/ERCC1/AXL/MSH2/CASP3/CCNE1/MSH6/IGFBP2/SMAD4/PIK3CA/RPS6KB1/RAD50/COL6A1/CTNNA1/DIRAS3/GATA3
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    92    92/140
## GO:0044423 GO:0044423           virion component     0     0/140
## GO:0110165 GO:0110165 cellular anatomical entity   140   140/140
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          geneID
## GO:0032991                                                                                                                                                                                                                                                                                   ESR1/BAP1/MET/NOTCH1/BCL2/KIT/NCOA3/ERBB3/RB1/ADAR/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/PTGS2/ETS1/SHC1/FOXO3/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/PXN/RAD51/SRSF1/TFRC/ARID1A/BECN1/PEA15/CCNE2/DIABLO/AKT1S1/ERCC1/MYH11/E2F1/HSPA1A/AXL/CAV1/MSH2/CASP3/CCNE1/YAP1/FOXM1/FN1/GAPDH/MSH6/SMAD4/SERPINE1/PIK3CA/RET/RPS6/XRCC1/RAB11A/WWTR1/RICTOR/TP53BP1/RAD50/TGM2/COL6A1/CDH2/CTNNA1/GATA3/RBM15/TSC1/ACVRL1
## GO:0044423                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
## GO:0110165 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB3/NF2/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/TFRC/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/DIABLO/AKT1S1/BID/ERCC1/CHEK2/MYH11/INPP4B/YWHAB/PRKCD/RAB25/PRRT2/MACC1/ACACA/E2F1/HSPA1A/PREX1/AXL/PTK2/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ANXA7/ASNS/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD4/PRDX1/SERPINE1/PIK3CA/RET/RPS6/RPS6KB1/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50/SYP/TGM2/COL6A1/CDH2/CTNNA1/DIRAS3/GATA3/RBM15/TTF1/VHL/TSC1/ACVRL1
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     2     2/144
## GO:0003824 GO:0003824           catalytic activity    65    65/144
## GO:0005198 GO:0005198 structural molecule activity     6     6/144
## GO:0005215 GO:0005215         transporter activity     2     2/144
## GO:0005488 GO:0005488                      binding   144   144/144
## GO:0009055 GO:0009055   electron transfer activity     0     0/144
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                geneID
## GO:0003774                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 MYH9/MYH11
## GO:0003824                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AKT2/BAP1/MET/PTEN/G6PD/KIT/NCOA3/ERBB2/HSPA1A/KRAS/NRAS/ADAR/PTK2/CCND1/CDKN1A/EGFR/PIK3R1/EZH2/RAF1/PTGS2/AKT1/VHL/ATM/PARP1/XIAP/CASP8/CDK1/CHEK1/EEF2/MTOR/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/MAPK8/RAD51/TUBA1B/EEF2K/ERCC1/CHEK2/INPP4B/PRKCD/RAB25/ACACA/AXL/MSH2/CASP3/CCNE1/ASNS/GAPDH/MSH6/PRDX1/PIK3CA/RET/RPS6KB1/XRCC1/RAB11A/NEK7/FASN/BRAF/RAD50/TGM2/DIRAS3/ACVRL1
## GO:0005198                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TUBA1B/MYH11/FN1/RPS6/COL6A1/CTNNA1
## GO:0005215                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 BCL2/IGF1R
## GO:0005488 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB2/ERBB3/NF2/HSPA1A/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/PTK2/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/VHL/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/MTOR/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/TFRC/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/DIABLO/AKT1S1/BID/ERCC1/CHEK2/MYH11/INPP4B/YWHAB/PRKCD/RAB25/PRRT2/MACC1/ACACA/SMAD1/E2F1/PREX1/AXL/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ANXA7/ASNS/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD4/PRDX1/SERPINE1/PIK3CA/RET/RPS6/RPS6KB1/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50/SYP/TGM2/COL6A1/CDH2/CTNNA1/DIRAS3/GATA3/RBM15/TTF1/TSC1/ACVRL1/XBP1
## GO:0009055                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    43    43/144
## GO:0002376 GO:0002376 immune system process    69    69/144
## GO:0008152 GO:0008152     metabolic process   126   126/144
## GO:0009987 GO:0009987      cellular process   144   144/144
## GO:0016032 GO:0016032         viral process    14    14/144
## GO:0022414 GO:0022414  reproductive process    42    42/144
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                geneID
## GO:0000003                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ESR1/ERRFI1/PTEN/NOTCH1/BCL2/KIT/RB1/MYH9/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/BCL2L1/ATM/STAT3/PARP1/AR/CASP8/CDK1/CTNNB1/MTOR/IGF1R/ITGA2/RAD51/CCNE2/ERCC1/SMAD1/AXL/MSH2/CASP3/CCNE1/MSH6/IGFBP2/SMAD4/PIK3CA/RPS6KB1/RAD50/COL6A1/CTNNA1/DIRAS3/GATA3
## GO:0002376                                                                                                                                                                                                                                                                                                                                                                                                                                                   ESR1/BAP1/NOTCH1/G6PD/BCL2/KIT/ERBB2/HSPA1A/RB1/ADAR/MYH9/PTK2/CDKN1A/MYC/PIK3R1/BCL2L11/EZH2/PIK3R2/RAF1/ETS1/FOXO3/YWHAZ/AKT1/ATM/STAT3/PARP1/XIAP/CASP8/CTNNB1/MTOR/IGF1R/ITGA2/MAPT/PRKCA/MAPK1/MAPK8/TFRC/YWHAE/ARID1A/BECN1/NDRG1/BID/ERCC1/PRKCD/PREX1/AXL/CAV1/MSH2/CASP3/ANXA1/FN1/GAPDH/MSH6/IGFBP2/PRDX1/SERPINE1/PIK3CA/RET/RPS6KB1/SQSTM1/GAB2/NEK7/TP53BP1/BRAF/LCN2/GATA3/RBM15/TSC1/XBP1
## GO:0008152                                                                                                            ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB2/ERBB3/NF2/HSPA1A/KRAS/RB1/ADAR/PDCD4/MYH9/PTK2/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/EZH2/PIK3R2/RAF1/PTGS2/ETS1/SHC1/FOXO3/YWHAZ/AKT1/VHL/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/MTOR/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/RAD51/SRSF1/TFRC/YWHAE/ARID1A/BECN1/CCNE2/EEF2K/DIABLO/AKT1S1/BID/ERCC1/CHEK2/INPP4B/YWHAB/PRKCD/MACC1/ACACA/SMAD1/E2F1/PREX1/AXL/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ANXA7/ASNS/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/SMAD4/PRDX1/SERPINE1/PIK3CA/RET/RPS6/RPS6KB1/XRCC1/SQSTM1/WWTR1/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50/TGM2/COL6A1/DIRAS3/GATA3/RBM15/TTF1/TSC1/ACVRL1/XBP1
## GO:0009987 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB2/ERBB3/NF2/HSPA1A/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/PTK2/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/VHL/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/MTOR/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/TFRC/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/DIABLO/AKT1S1/BID/ERCC1/CHEK2/MYH11/INPP4B/YWHAB/PRKCD/RAB25/PRRT2/MACC1/ACACA/SMAD1/E2F1/PREX1/AXL/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ANXA7/ASNS/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD4/PRDX1/SERPINE1/PIK3CA/RET/RPS6/RPS6KB1/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50/SYP/TGM2/COL6A1/CDH2/CTNNA1/DIRAS3/GATA3/RBM15/TTF1/TSC1/ACVRL1/XBP1
## GO:0016032                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 NOTCH1/BCL2/HSPA1A/ADAR/EGFR/JUN/AKT1/CDK1/GSK3B/ITGA2/TFRC/BECN1/AXL/CAV1
## GO:0022414                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ESR1/ERRFI1/PTEN/NOTCH1/BCL2/KIT/RB1/MYH9/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/BCL2L1/ATM/PARP1/AR/CASP8/CDK1/CTNNB1/MTOR/IGF1R/ITGA2/RAD51/CCNE2/ERCC1/SMAD1/AXL/MSH2/CASP3/CCNE1/MSH6/IGFBP2/SMAD4/PIK3CA/RPS6KB1/RAD50/COL6A1/CTNNA1/DIRAS3/GATA3
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    96    96/144
## GO:0044423 GO:0044423           virion component     0     0/144
## GO:0110165 GO:0110165 cellular anatomical entity   144   144/144
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                geneID
## GO:0032991                                                                                                                                                                                                                                                                                   ESR1/BAP1/MET/NOTCH1/BCL2/KIT/NCOA3/ERBB2/ERBB3/HSPA1A/RB1/ADAR/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/PTGS2/ETS1/SHC1/FOXO3/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/MTOR/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/PXN/RAD51/SRSF1/TFRC/ARID1A/BECN1/PEA15/CCNE2/DIABLO/AKT1S1/ERCC1/MYH11/SMAD1/E2F1/AXL/CAV1/MSH2/CASP3/CCNE1/YAP1/FOXM1/FN1/GAPDH/MSH6/SMAD4/SERPINE1/PIK3CA/RET/RPS6/XRCC1/RAB11A/WWTR1/RICTOR/TP53BP1/RAD50/TGM2/COL6A1/CDH2/CTNNA1/GATA3/RBM15/TSC1/ACVRL1/XBP1
## GO:0044423                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
## GO:0110165 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB2/ERBB3/NF2/HSPA1A/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/PTK2/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/VHL/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/MTOR/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/TFRC/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/DIABLO/AKT1S1/BID/ERCC1/CHEK2/MYH11/INPP4B/YWHAB/PRKCD/RAB25/PRRT2/MACC1/ACACA/SMAD1/E2F1/PREX1/AXL/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ANXA7/ASNS/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD4/PRDX1/SERPINE1/PIK3CA/RET/RPS6/RPS6KB1/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50/SYP/TGM2/COL6A1/CDH2/CTNNA1/DIRAS3/GATA3/RBM15/TTF1/TSC1/ACVRL1/XBP1
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1      1/18
## GO:0003824 GO:0003824           catalytic activity     7      7/18
## GO:0005198 GO:0005198 structural molecule activity     1      1/18
## GO:0005215 GO:0005215         transporter activity     0      0/18
## GO:0005488 GO:0005488                      binding    18     18/18
## GO:0009055 GO:0009055   electron transfer activity     0      0/18
##                                                                                                    geneID
## GO:0003774                                                                                          MYH11
## GO:0003824                                                             GAPDH/G6PD/FASN/ATM/MSH6/EGFR/MSH2
## GO:0005198                                                                                          MYH11
## GO:0005215                                                                                               
## GO:0005488 GAPDH/G6PD/IGFBP2/FASN/PDCD4/AR/MYH11/PREX1/ATM/TTF1/MSH6/TFRC/RBM15/GATA3/EGFR/TSC1/IRS1/MSH2
## GO:0009055                                                                                               
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction     7      7/18
## GO:0002376 GO:0002376 immune system process    11     11/18
## GO:0008152 GO:0008152     metabolic process    16     16/18
## GO:0009987 GO:0009987      cellular process    18     18/18
## GO:0016032 GO:0016032         viral process     2      2/18
## GO:0022414 GO:0022414  reproductive process     7      7/18
##                                                                                                    geneID
## GO:0000003                                                             IGFBP2/AR/ATM/MSH6/GATA3/EGFR/MSH2
## GO:0002376                                    GAPDH/G6PD/IGFBP2/PREX1/ATM/MSH6/TFRC/RBM15/GATA3/TSC1/MSH2
## GO:0008152              GAPDH/G6PD/FASN/PDCD4/AR/PREX1/ATM/TTF1/MSH6/TFRC/RBM15/GATA3/EGFR/TSC1/IRS1/MSH2
## GO:0009987 GAPDH/G6PD/IGFBP2/FASN/PDCD4/AR/MYH11/PREX1/ATM/TTF1/MSH6/TFRC/RBM15/GATA3/EGFR/TSC1/IRS1/MSH2
## GO:0016032                                                                                      TFRC/EGFR
## GO:0022414                                                             IGFBP2/AR/ATM/MSH6/GATA3/EGFR/MSH2
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    12     12/18
## GO:0044423 GO:0044423           virion component     0      0/18
## GO:0110165 GO:0110165 cellular anatomical entity    18     18/18
##                                                                                                    geneID
## GO:0032991                                   GAPDH/AR/MYH11/ATM/MSH6/TFRC/RBM15/GATA3/EGFR/TSC1/IRS1/MSH2
## GO:0044423                                                                                               
## GO:0110165 GAPDH/G6PD/IGFBP2/FASN/PDCD4/AR/MYH11/PREX1/ATM/TTF1/MSH6/TFRC/RBM15/GATA3/EGFR/TSC1/IRS1/MSH2
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1      1/25
## GO:0003824 GO:0003824           catalytic activity    13     13/25
## GO:0005198 GO:0005198 structural molecule activity     1      1/25
## GO:0005215 GO:0005215         transporter activity     0      0/25
## GO:0005488 GO:0005488                      binding    25     25/25
## GO:0009055 GO:0009055   electron transfer activity     0      0/25
##                                                                                                                                          geneID
## GO:0003774                                                                                                                                MYH11
## GO:0003824                                                                   FASN/GAPDH/G6PD/MSH6/ATM/ASNS/PTEN/MSH2/EGFR/INPP4B/VHL/PRDX1/PDK1
## GO:0005198                                                                                                                                MYH11
## GO:0005215                                                                                                                                     
## GO:0005488 TFRC/FASN/GATA3/GAPDH/G6PD/MYH11/PDCD4/MSH6/ATM/RBM15/ASNS/PTEN/MSH2/IGFBP2/PEA15/EGFR/INPP4B/TSC1/VHL/TTF1/IRS1/PRDX1/XBP1/NF2/PDK1
## GO:0009055                                                                                                                                     
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction     7      7/25
## GO:0002376 GO:0002376 immune system process    12     12/25
## GO:0008152 GO:0008152     metabolic process    22     22/25
## GO:0009987 GO:0009987      cellular process    25     25/25
## GO:0016032 GO:0016032         viral process     2      2/25
## GO:0022414 GO:0022414  reproductive process     7      7/25
##                                                                                                                                          geneID
## GO:0000003                                                                                                 GATA3/MSH6/ATM/PTEN/MSH2/IGFBP2/EGFR
## GO:0002376                                                                     TFRC/GATA3/GAPDH/G6PD/MSH6/ATM/RBM15/MSH2/IGFBP2/TSC1/PRDX1/XBP1
## GO:0008152                    TFRC/FASN/GATA3/GAPDH/G6PD/PDCD4/MSH6/ATM/RBM15/ASNS/PTEN/MSH2/EGFR/INPP4B/TSC1/VHL/TTF1/IRS1/PRDX1/XBP1/NF2/PDK1
## GO:0009987 TFRC/FASN/GATA3/GAPDH/G6PD/MYH11/PDCD4/MSH6/ATM/RBM15/ASNS/PTEN/MSH2/IGFBP2/PEA15/EGFR/INPP4B/TSC1/VHL/TTF1/IRS1/PRDX1/XBP1/NF2/PDK1
## GO:0016032                                                                                                                            TFRC/EGFR
## GO:0022414                                                                                                 GATA3/MSH6/ATM/PTEN/MSH2/IGFBP2/EGFR
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    14     14/25
## GO:0044423 GO:0044423           virion component     0      0/25
## GO:0110165 GO:0110165 cellular anatomical entity    25     25/25
##                                                                                                                                          geneID
## GO:0032991                                                            TFRC/GATA3/GAPDH/MYH11/MSH6/ATM/RBM15/MSH2/PEA15/EGFR/TSC1/IRS1/XBP1/PDK1
## GO:0044423                                                                                                                                     
## GO:0110165 TFRC/FASN/GATA3/GAPDH/G6PD/MYH11/PDCD4/MSH6/ATM/RBM15/ASNS/PTEN/MSH2/IGFBP2/PEA15/EGFR/INPP4B/TSC1/VHL/TTF1/IRS1/PRDX1/XBP1/NF2/PDK1
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1      1/48
## GO:0003824 GO:0003824           catalytic activity    18     18/48
## GO:0005198 GO:0005198 structural molecule activity     5      5/48
## GO:0005215 GO:0005215         transporter activity     0      0/48
## GO:0005488 GO:0005488                      binding    48     48/48
## GO:0009055 GO:0009055   electron transfer activity     0      0/48
##                                                                                                                                                                                                                                                                                                 geneID
## GO:0003774                                                                                                                                                                                                                                                                                        MYH9
## GO:0003824                                                                                                                                                                                    GAPDH/EEF2/TGM2/HSPA1A/FASN/PRKCA/G6PD/PIK3R1/CCND1/AKT2/CDKN1A/AKT1/ADAR/RAB11A/PARP1/DIRAS3/KDR/TUBA1B
## GO:0005198                                                                                                                                                                                                                                                               COL6A1/RPS6/CTNNA1/FN1/TUBA1B
## GO:0005215                                                                                                                                                                                                                                                                                            
## GO:0005488 GAPDH/SQSTM1/EEF2/TGM2/HSPA1A/IGFBP2/COL6A1/SYP/CTNNB1/CDH2/FASN/RPS6/PRKCA/ANXA1/G6PD/NDRG1/ERBB3/CTNNA1/SERPINE1/PDCD4/FN1/PIK3R1/CCND1/MYH9/PXN/ERRFI1/PREX1/AKT2/CDKN1A/YWHAZ/PEA15/RBM3/AKT1/ITGA2/ADAR/RAB11A/YWHAB/TFRC/PARP1/DIRAS3/KDR/EIF4G1/JUN/TUBA1B/STAT5A/PIK3R2/XBP1/NOTCH3
## GO:0009055                                                                                                                                                                                                                                                                                            
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    11     11/48
## GO:0002376 GO:0002376 immune system process    23     23/48
## GO:0008152 GO:0008152     metabolic process    39     39/48
## GO:0009987 GO:0009987      cellular process    48     48/48
## GO:0016032 GO:0016032         viral process     6      6/48
## GO:0022414 GO:0022414  reproductive process    11     11/48
##                                                                                                                                                                                                                                                                                                 geneID
## GO:0000003                                                                                                                                                                                                                         IGFBP2/COL6A1/CTNNB1/CTNNA1/MYH9/ERRFI1/AKT1/ITGA2/PARP1/DIRAS3/KDR
## GO:0002376                                                                                                                                                 GAPDH/SQSTM1/HSPA1A/IGFBP2/CTNNB1/PRKCA/ANXA1/G6PD/NDRG1/SERPINE1/FN1/PIK3R1/MYH9/PREX1/CDKN1A/YWHAZ/AKT1/ITGA2/ADAR/TFRC/PARP1/PIK3R2/XBP1
## GO:0008152                                                      GAPDH/SQSTM1/EEF2/TGM2/HSPA1A/COL6A1/CTNNB1/FASN/RPS6/PRKCA/ANXA1/G6PD/ERBB3/SERPINE1/PDCD4/FN1/PIK3R1/CCND1/MYH9/ERRFI1/PREX1/AKT2/CDKN1A/YWHAZ/RBM3/AKT1/ITGA2/ADAR/YWHAB/TFRC/PARP1/DIRAS3/KDR/EIF4G1/JUN/STAT5A/PIK3R2/XBP1/NOTCH3
## GO:0009987 GAPDH/SQSTM1/EEF2/TGM2/HSPA1A/IGFBP2/COL6A1/SYP/CTNNB1/CDH2/FASN/RPS6/PRKCA/ANXA1/G6PD/NDRG1/ERBB3/CTNNA1/SERPINE1/PDCD4/FN1/PIK3R1/CCND1/MYH9/PXN/ERRFI1/PREX1/AKT2/CDKN1A/YWHAZ/PEA15/RBM3/AKT1/ITGA2/ADAR/RAB11A/YWHAB/TFRC/PARP1/DIRAS3/KDR/EIF4G1/JUN/TUBA1B/STAT5A/PIK3R2/XBP1/NOTCH3
## GO:0016032                                                                                                                                                                                                                                                             HSPA1A/AKT1/ITGA2/ADAR/TFRC/JUN
## GO:0022414                                                                                                                                                                                                                         IGFBP2/COL6A1/CTNNB1/CTNNA1/MYH9/ERRFI1/AKT1/ITGA2/PARP1/DIRAS3/KDR
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    33     33/48
## GO:0044423 GO:0044423           virion component     0      0/48
## GO:0110165 GO:0110165 cellular anatomical entity    48     48/48
##                                                                                                                                                                                                                                                                                                 geneID
## GO:0032991                                                                                           GAPDH/EEF2/TGM2/HSPA1A/COL6A1/CTNNB1/CDH2/RPS6/PRKCA/ERBB3/CTNNA1/SERPINE1/FN1/PIK3R1/CCND1/MYH9/PXN/CDKN1A/PEA15/RBM3/AKT1/ITGA2/ADAR/RAB11A/TFRC/PARP1/KDR/EIF4G1/JUN/STAT5A/PIK3R2/XBP1/NOTCH3
## GO:0044423                                                                                                                                                                                                                                                                                            
## GO:0110165 GAPDH/SQSTM1/EEF2/TGM2/HSPA1A/IGFBP2/COL6A1/SYP/CTNNB1/CDH2/FASN/RPS6/PRKCA/ANXA1/G6PD/NDRG1/ERBB3/CTNNA1/SERPINE1/PDCD4/FN1/PIK3R1/CCND1/MYH9/PXN/ERRFI1/PREX1/AKT2/CDKN1A/YWHAZ/PEA15/RBM3/AKT1/ITGA2/ADAR/RAB11A/YWHAB/TFRC/PARP1/DIRAS3/KDR/EIF4G1/JUN/TUBA1B/STAT5A/PIK3R2/XBP1/NOTCH3
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1      1/45
## GO:0003824 GO:0003824           catalytic activity    18     18/45
## GO:0005198 GO:0005198 structural molecule activity     4      4/45
## GO:0005215 GO:0005215         transporter activity     0      0/45
## GO:0005488 GO:0005488                      binding    45     45/45
## GO:0009055 GO:0009055   electron transfer activity     0      0/45
##                                                                                                                                                                                                                                                                            geneID
## GO:0003774                                                                                                                                                                                                                                                                   MYH9
## GO:0003824                                                                                                                                                              EEF2/GAPDH/HSPA1A/CCND1/ADAR/TUBA1B/FASN/CDKN1A/AKT1/TGM2/PRKCA/PIK3R1/DIRAS3/G6PD/PARK7/PRKCD/BAP1/IDH3A
## GO:0005198                                                                                                                                                                                                                                                 FN1/RPS6/TUBA1B/COL6A1
## GO:0005215                                                                                                                                                                                                                                                                       
## GO:0005488 FN1/SYP/EEF2/GAPDH/HSPA1A/CTNNB1/SQSTM1/RPS6/CCND1/ADAR/CDH2/TUBA1B/TFRC/SERPINE1/FASN/CDKN1A/PEA15/COL6A1/PIK3R2/SHC1/ITGA2/STMN1/NDRG1/AKT1/IGFBP2/YWHAE/TGM2/PXN/EIF4G1/PRKCA/PIK3R1/DIRAS3/G6PD/PARK7/MYH9/ANXA1/PRKCD/BAP1/PDCD4/JUN/CCNB1/DVL3/FOXM1/ANXA7/IDH3A
## GO:0009055                                                                                                                                                                                                                                                                       
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction     8      8/45
## GO:0002376 GO:0002376 immune system process    23     23/45
## GO:0008152 GO:0008152     metabolic process    37     37/45
## GO:0009987 GO:0009987      cellular process    45     45/45
## GO:0016032 GO:0016032         viral process     6      6/45
## GO:0022414 GO:0022414  reproductive process     8      8/45
##                                                                                                                                                                                                                                                                            geneID
## GO:0000003                                                                                                                                                                                                                      CTNNB1/COL6A1/ITGA2/AKT1/IGFBP2/DIRAS3/PARK7/MYH9
## GO:0002376                                                                                                                            FN1/GAPDH/HSPA1A/CTNNB1/SQSTM1/ADAR/TFRC/SERPINE1/CDKN1A/PIK3R2/ITGA2/NDRG1/AKT1/IGFBP2/YWHAE/PRKCA/PIK3R1/G6PD/PARK7/MYH9/ANXA1/PRKCD/BAP1
## GO:0008152                                              FN1/EEF2/GAPDH/HSPA1A/CTNNB1/SQSTM1/RPS6/CCND1/ADAR/TFRC/SERPINE1/FASN/CDKN1A/COL6A1/PIK3R2/SHC1/ITGA2/AKT1/YWHAE/TGM2/EIF4G1/PRKCA/PIK3R1/DIRAS3/G6PD/PARK7/MYH9/ANXA1/PRKCD/BAP1/PDCD4/JUN/CCNB1/DVL3/FOXM1/ANXA7/IDH3A
## GO:0009987 FN1/SYP/EEF2/GAPDH/HSPA1A/CTNNB1/SQSTM1/RPS6/CCND1/ADAR/CDH2/TUBA1B/TFRC/SERPINE1/FASN/CDKN1A/PEA15/COL6A1/PIK3R2/SHC1/ITGA2/STMN1/NDRG1/AKT1/IGFBP2/YWHAE/TGM2/PXN/EIF4G1/PRKCA/PIK3R1/DIRAS3/G6PD/PARK7/MYH9/ANXA1/PRKCD/BAP1/PDCD4/JUN/CCNB1/DVL3/FOXM1/ANXA7/IDH3A
## GO:0016032                                                                                                                                                                                                                                        HSPA1A/ADAR/TFRC/ITGA2/AKT1/JUN
## GO:0022414                                                                                                                                                                                                                      CTNNB1/COL6A1/ITGA2/AKT1/IGFBP2/DIRAS3/PARK7/MYH9
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    31     31/45
## GO:0044423 GO:0044423           virion component     0      0/45
## GO:0110165 GO:0110165 cellular anatomical entity    45     45/45
##                                                                                                                                                                                                                                                                            geneID
## GO:0032991                                                                                     FN1/EEF2/GAPDH/HSPA1A/CTNNB1/RPS6/CCND1/ADAR/CDH2/TFRC/SERPINE1/CDKN1A/PEA15/COL6A1/PIK3R2/SHC1/ITGA2/AKT1/TGM2/PXN/EIF4G1/PRKCA/PIK3R1/PARK7/MYH9/BAP1/JUN/CCNB1/DVL3/FOXM1/IDH3A
## GO:0044423                                                                                                                                                                                                                                                                       
## GO:0110165 FN1/SYP/EEF2/GAPDH/HSPA1A/CTNNB1/SQSTM1/RPS6/CCND1/ADAR/CDH2/TUBA1B/TFRC/SERPINE1/FASN/CDKN1A/PEA15/COL6A1/PIK3R2/SHC1/ITGA2/STMN1/NDRG1/AKT1/IGFBP2/YWHAE/TGM2/PXN/EIF4G1/PRKCA/PIK3R1/DIRAS3/G6PD/PARK7/MYH9/ANXA1/PRKCD/BAP1/PDCD4/JUN/CCNB1/DVL3/FOXM1/ANXA7/IDH3A
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1      1/53
## GO:0003824 GO:0003824           catalytic activity    19     19/53
## GO:0005198 GO:0005198 structural molecule activity     5      5/53
## GO:0005215 GO:0005215         transporter activity     0      0/53
## GO:0005488 GO:0005488                      binding    53     53/53
## GO:0009055 GO:0009055   electron transfer activity     0      0/53
##                                                                                                                                                                                                                                                                                                                              geneID
## GO:0003774                                                                                                                                                                                                                                                                                                                     MYH9
## GO:0003824                                                                                                                                                                                                             GAPDH/TGM2/HSPA1A/EEF2/PRKCA/FASN/G6PD/PIK3R1/CCND1/PARP1/AKT2/CDKN1A/KDR/AKT1/TUBA1B/RAB11A/DIRAS3/MET/ADAR
## GO:0005198                                                                                                                                                                                                                                                                                            COL6A1/RPS6/FN1/CTNNA1/TUBA1B
## GO:0005215                                                                                                                                                                                                                                                                                                                         
## GO:0005488 GAPDH/SQSTM1/IGFBP2/TGM2/HSPA1A/EEF2/COL6A1/ERBB3/SYP/CDH2/PRKCA/FASN/CTNNB1/ANXA1/RPS6/PDCD4/G6PD/NDRG1/FN1/PIK3R1/CTNNA1/ERRFI1/SERPINE1/CCND1/MYH9/YWHAZ/PEA15/PXN/TFRC/PARP1/PREX1/AKT2/CDKN1A/EIF4G1/BCL2L1/KDR/AKT1/JUN/TUBA1B/PIK3R2/ITGA2/YWHAE/RAB11A/ETS1/STAT5A/DIRAS3/MET/ADAR/RBM3/STMN1/NOTCH3/YWHAB/ANXA7
## GO:0009055                                                                                                                                                                                                                                                                                                                         
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    12     12/53
## GO:0002376 GO:0002376 immune system process    24     24/53
## GO:0008152 GO:0008152     metabolic process    42     42/53
## GO:0009987 GO:0009987      cellular process    53     53/53
## GO:0016032 GO:0016032         viral process     6      6/53
## GO:0022414 GO:0022414  reproductive process    12     12/53
##                                                                                                                                                                                                                                                                                                                              geneID
## GO:0000003                                                                                                                                                                                                                                               IGFBP2/COL6A1/CTNNB1/CTNNA1/ERRFI1/MYH9/PARP1/BCL2L1/KDR/AKT1/ITGA2/DIRAS3
## GO:0002376                                                                                                                                                                        GAPDH/SQSTM1/IGFBP2/HSPA1A/PRKCA/CTNNB1/ANXA1/G6PD/NDRG1/FN1/PIK3R1/SERPINE1/MYH9/YWHAZ/TFRC/PARP1/PREX1/CDKN1A/AKT1/PIK3R2/ITGA2/YWHAE/ETS1/ADAR
## GO:0008152                                                                   GAPDH/SQSTM1/TGM2/HSPA1A/EEF2/COL6A1/ERBB3/PRKCA/FASN/CTNNB1/ANXA1/RPS6/PDCD4/G6PD/FN1/PIK3R1/ERRFI1/SERPINE1/CCND1/MYH9/YWHAZ/TFRC/PARP1/PREX1/AKT2/CDKN1A/EIF4G1/KDR/AKT1/JUN/PIK3R2/ITGA2/YWHAE/ETS1/STAT5A/DIRAS3/MET/ADAR/RBM3/NOTCH3/YWHAB/ANXA7
## GO:0009987 GAPDH/SQSTM1/IGFBP2/TGM2/HSPA1A/EEF2/COL6A1/ERBB3/SYP/CDH2/PRKCA/FASN/CTNNB1/ANXA1/RPS6/PDCD4/G6PD/NDRG1/FN1/PIK3R1/CTNNA1/ERRFI1/SERPINE1/CCND1/MYH9/YWHAZ/PEA15/PXN/TFRC/PARP1/PREX1/AKT2/CDKN1A/EIF4G1/BCL2L1/KDR/AKT1/JUN/TUBA1B/PIK3R2/ITGA2/YWHAE/RAB11A/ETS1/STAT5A/DIRAS3/MET/ADAR/RBM3/STMN1/NOTCH3/YWHAB/ANXA7
## GO:0016032                                                                                                                                                                                                                                                                                          HSPA1A/TFRC/AKT1/JUN/ITGA2/ADAR
## GO:0022414                                                                                                                                                                                                                                               IGFBP2/COL6A1/CTNNB1/CTNNA1/ERRFI1/MYH9/PARP1/BCL2L1/KDR/AKT1/ITGA2/DIRAS3
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    35     35/53
## GO:0044423 GO:0044423           virion component     0      0/53
## GO:0110165 GO:0110165 cellular anatomical entity    53     53/53
##                                                                                                                                                                                                                                                                                                                              geneID
## GO:0032991                                                                                                             GAPDH/TGM2/HSPA1A/EEF2/COL6A1/ERBB3/CDH2/PRKCA/CTNNB1/RPS6/FN1/PIK3R1/CTNNA1/SERPINE1/CCND1/MYH9/PEA15/PXN/TFRC/PARP1/CDKN1A/EIF4G1/BCL2L1/KDR/AKT1/JUN/PIK3R2/ITGA2/RAB11A/ETS1/STAT5A/MET/ADAR/RBM3/NOTCH3
## GO:0044423                                                                                                                                                                                                                                                                                                                         
## GO:0110165 GAPDH/SQSTM1/IGFBP2/TGM2/HSPA1A/EEF2/COL6A1/ERBB3/SYP/CDH2/PRKCA/FASN/CTNNB1/ANXA1/RPS6/PDCD4/G6PD/NDRG1/FN1/PIK3R1/CTNNA1/ERRFI1/SERPINE1/CCND1/MYH9/YWHAZ/PEA15/PXN/TFRC/PARP1/PREX1/AKT2/CDKN1A/EIF4G1/BCL2L1/KDR/AKT1/JUN/TUBA1B/PIK3R2/ITGA2/YWHAE/RAB11A/ETS1/STAT5A/DIRAS3/MET/ADAR/RBM3/STMN1/NOTCH3/YWHAB/ANXA7
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1      1/49
## GO:0003824 GO:0003824           catalytic activity    21     21/49
## GO:0005198 GO:0005198 structural molecule activity     5      5/49
## GO:0005215 GO:0005215         transporter activity     0      0/49
## GO:0005488 GO:0005488                      binding    49     49/49
## GO:0009055 GO:0009055   electron transfer activity     0      0/49
##                                                                                                                                                                                                                                                                                                  geneID
## GO:0003774                                                                                                                                                                                                                                                                                         MYH9
## GO:0003824                                                                                                                                                                    GAPDH/HSPA1A/EEF2/ADAR/CCND1/TUBA1B/CDKN1A/FASN/PRKCA/TGM2/AKT1/DIRAS3/PCNA/G6PD/IDH3A/PRKCD/MAPK1/BAP1/PARK7/PIK3R1/CDK1
## GO:0005198                                                                                                                                                                                                                                                                FN1/RPS6/TUBA1B/COL6A1/CTNNA1
## GO:0005215                                                                                                                                                                                                                                                                                             
## GO:0005488 FN1/GAPDH/SYP/SQSTM1/HSPA1A/EEF2/CTNNB1/RPS6/ADAR/CCND1/TUBA1B/CDH2/TFRC/CDKN1A/FASN/SERPINE1/COL6A1/PEA15/SHC1/PIK3R2/IGFBP2/ITGA2/YWHAE/STMN1/EIF4G1/NDRG1/PRKCA/TGM2/PXN/AKT1/DIRAS3/JUN/ANXA1/PCNA/PDCD4/MYH9/G6PD/IDH3A/PRKCD/MAPK1/BAP1/PARK7/PIK3R1/RBM3/ANLN/CCNB1/CDK1/CTNNA1/ANXA7
## GO:0009055                                                                                                                                                                                                                                                                                             
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    11     11/49
## GO:0002376 GO:0002376 immune system process    24     24/49
## GO:0008152 GO:0008152     metabolic process    39     39/49
## GO:0009987 GO:0009987      cellular process    49     49/49
## GO:0016032 GO:0016032         viral process     7      7/49
## GO:0022414 GO:0022414  reproductive process    11     11/49
##                                                                                                                                                                                                                                                                                                  geneID
## GO:0000003                                                                                                                                                                                                                           CTNNB1/COL6A1/IGFBP2/ITGA2/AKT1/DIRAS3/PCNA/MYH9/PARK7/CDK1/CTNNA1
## GO:0002376                                                                                                                                            FN1/GAPDH/SQSTM1/HSPA1A/CTNNB1/ADAR/TFRC/CDKN1A/SERPINE1/PIK3R2/IGFBP2/ITGA2/YWHAE/NDRG1/PRKCA/AKT1/ANXA1/MYH9/G6PD/PRKCD/MAPK1/BAP1/PARK7/PIK3R1
## GO:0008152                                                          FN1/GAPDH/SQSTM1/HSPA1A/EEF2/CTNNB1/RPS6/ADAR/CCND1/TFRC/CDKN1A/FASN/SERPINE1/COL6A1/SHC1/PIK3R2/ITGA2/YWHAE/EIF4G1/PRKCA/TGM2/AKT1/DIRAS3/JUN/ANXA1/PCNA/PDCD4/MYH9/G6PD/IDH3A/PRKCD/MAPK1/BAP1/PARK7/PIK3R1/RBM3/CCNB1/CDK1/ANXA7
## GO:0009987 FN1/GAPDH/SYP/SQSTM1/HSPA1A/EEF2/CTNNB1/RPS6/ADAR/CCND1/TUBA1B/CDH2/TFRC/CDKN1A/FASN/SERPINE1/COL6A1/PEA15/SHC1/PIK3R2/IGFBP2/ITGA2/YWHAE/STMN1/EIF4G1/NDRG1/PRKCA/TGM2/PXN/AKT1/DIRAS3/JUN/ANXA1/PCNA/PDCD4/MYH9/G6PD/IDH3A/PRKCD/MAPK1/BAP1/PARK7/PIK3R1/RBM3/ANLN/CCNB1/CDK1/CTNNA1/ANXA7
## GO:0016032                                                                                                                                                                                                                                                         HSPA1A/ADAR/TFRC/ITGA2/AKT1/JUN/CDK1
## GO:0022414                                                                                                                                                                                                                           CTNNB1/COL6A1/IGFBP2/ITGA2/AKT1/DIRAS3/PCNA/MYH9/PARK7/CDK1/CTNNA1
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    33     33/49
## GO:0044423 GO:0044423           virion component     0      0/49
## GO:0110165 GO:0110165 cellular anatomical entity    49     49/49
##                                                                                                                                                                                                                                                                                                  geneID
## GO:0032991                                                                                                FN1/GAPDH/HSPA1A/EEF2/CTNNB1/RPS6/ADAR/CCND1/CDH2/TFRC/CDKN1A/SERPINE1/COL6A1/PEA15/SHC1/PIK3R2/ITGA2/EIF4G1/PRKCA/TGM2/PXN/AKT1/JUN/PCNA/MYH9/IDH3A/BAP1/PARK7/PIK3R1/RBM3/CCNB1/CDK1/CTNNA1
## GO:0044423                                                                                                                                                                                                                                                                                             
## GO:0110165 FN1/GAPDH/SYP/SQSTM1/HSPA1A/EEF2/CTNNB1/RPS6/ADAR/CCND1/TUBA1B/CDH2/TFRC/CDKN1A/FASN/SERPINE1/COL6A1/PEA15/SHC1/PIK3R2/IGFBP2/ITGA2/YWHAE/STMN1/EIF4G1/NDRG1/PRKCA/TGM2/PXN/AKT1/DIRAS3/JUN/ANXA1/PCNA/PDCD4/MYH9/G6PD/IDH3A/PRKCD/MAPK1/BAP1/PARK7/PIK3R1/RBM3/ANLN/CCNB1/CDK1/CTNNA1/ANXA7
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     2     2/130
## GO:0003824 GO:0003824           catalytic activity    60    60/130
## GO:0005198 GO:0005198 structural molecule activity     4     4/130
## GO:0005215 GO:0005215         transporter activity     2     2/130
## GO:0005488 GO:0005488                      binding   130   130/130
## GO:0009055 GO:0009055   electron transfer activity     0     0/130
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  geneID
## GO:0003774                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   MYH9/MYH11
## GO:0003824                                                                                                                                                                                                                                                                                                                                                                                                                           AKT2/BAP1/MET/PTEN/G6PD/KIT/NCOA3/ERBB2/KRAS/NRAS/ADAR/CCND1/CDKN1A/EGFR/PIK3R1/EZH2/RAF1/PTGS2/AKT1/ATM/PARP1/XIAP/CASP8/CDK1/CHEK1/EEF2/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/MAPK8/RAD51/TUBA1B/EEF2K/ERCC1/CHEK2/INPP4B/PRKCD/RAB25/ACACA/HSPA1A/AXL/PTK2/MSH2/CASP3/CCNE1/ASNS/GAPDH/MSH6/PRDX1/PIK3CA/RET/RPS6KB1/XRCC1/RAB11A/NEK7/FASN/BRAF/RAD50
## GO:0005198                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TUBA1B/MYH11/FN1/RPS6
## GO:0005215                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   BCL2/IGF1R
## GO:0005488 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB2/ERBB3/NF2/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/TFRC/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/DIABLO/AKT1S1/BID/ERCC1/CHEK2/MYH11/INPP4B/YWHAB/PRKCD/RAB25/PRRT2/MACC1/ACACA/SMAD1/E2F1/HSPA1A/PREX1/AXL/PTK2/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ANXA7/ASNS/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD4/PRDX1/SERPINE1/PIK3CA/RET/RPS6/RPS6KB1/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50
## GO:0009055                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    38    38/130
## GO:0002376 GO:0002376 immune system process    64    64/130
## GO:0008152 GO:0008152     metabolic process   115   115/130
## GO:0009987 GO:0009987      cellular process   130   130/130
## GO:0016032 GO:0016032         viral process    14    14/130
## GO:0022414 GO:0022414  reproductive process    37    37/130
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  geneID
## GO:0000003                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ESR1/ERRFI1/PTEN/NOTCH1/BCL2/KIT/RB1/MYH9/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/BCL2L1/ATM/STAT3/PARP1/AR/CASP8/CDK1/CTNNB1/IGF1R/ITGA2/RAD51/CCNE2/ERCC1/SMAD1/AXL/MSH2/CASP3/CCNE1/MSH6/IGFBP2/SMAD4/PIK3CA/RPS6KB1/RAD50
## GO:0002376                                                                                                                                                                                                                                                                                                                                                                                                ESR1/BAP1/NOTCH1/G6PD/BCL2/KIT/ERBB2/RB1/ADAR/MYH9/CDKN1A/MYC/PIK3R1/BCL2L11/EZH2/PIK3R2/RAF1/ETS1/FOXO3/YWHAZ/AKT1/ATM/STAT3/PARP1/XIAP/CASP8/CTNNB1/IGF1R/ITGA2/MAPT/PRKCA/MAPK1/MAPK8/TFRC/YWHAE/ARID1A/BECN1/NDRG1/BID/ERCC1/PRKCD/HSPA1A/PREX1/AXL/PTK2/CAV1/MSH2/CASP3/ANXA1/FN1/GAPDH/MSH6/IGFBP2/PRDX1/SERPINE1/PIK3CA/RET/RPS6KB1/SQSTM1/GAB2/NEK7/TP53BP1/BRAF/LCN2
## GO:0008152                                                                                            ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB2/ERBB3/NF2/KRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/EZH2/PIK3R2/RAF1/PTGS2/ETS1/SHC1/FOXO3/YWHAZ/AKT1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/RAD51/SRSF1/TFRC/YWHAE/ARID1A/BECN1/CCNE2/EEF2K/DIABLO/AKT1S1/BID/ERCC1/CHEK2/INPP4B/YWHAB/PRKCD/MACC1/ACACA/SMAD1/E2F1/HSPA1A/PREX1/AXL/PTK2/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ANXA7/ASNS/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/SMAD4/PRDX1/SERPINE1/PIK3CA/RET/RPS6/RPS6KB1/XRCC1/SQSTM1/WWTR1/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50
## GO:0009987 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB2/ERBB3/NF2/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/TFRC/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/DIABLO/AKT1S1/BID/ERCC1/CHEK2/MYH11/INPP4B/YWHAB/PRKCD/RAB25/PRRT2/MACC1/ACACA/SMAD1/E2F1/HSPA1A/PREX1/AXL/PTK2/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ANXA7/ASNS/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD4/PRDX1/SERPINE1/PIK3CA/RET/RPS6/RPS6KB1/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50
## GO:0016032                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   NOTCH1/BCL2/ADAR/EGFR/JUN/AKT1/CDK1/GSK3B/ITGA2/TFRC/BECN1/HSPA1A/AXL/CAV1
## GO:0022414                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ESR1/ERRFI1/PTEN/NOTCH1/BCL2/KIT/RB1/MYH9/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/BCL2L1/ATM/PARP1/AR/CASP8/CDK1/CTNNB1/IGF1R/ITGA2/RAD51/CCNE2/ERCC1/SMAD1/AXL/MSH2/CASP3/CCNE1/MSH6/IGFBP2/SMAD4/PIK3CA/RPS6KB1/RAD50
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    86    86/130
## GO:0044423 GO:0044423           virion component     0     0/130
## GO:0110165 GO:0110165 cellular anatomical entity   130   130/130
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  geneID
## GO:0032991                                                                                                                                                                                                                                                               ESR1/BAP1/MET/NOTCH1/BCL2/KIT/NCOA3/ERBB2/ERBB3/RB1/ADAR/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/PTGS2/ETS1/SHC1/FOXO3/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/PXN/RAD51/SRSF1/TFRC/ARID1A/BECN1/PEA15/CCNE2/DIABLO/AKT1S1/ERCC1/MYH11/SMAD1/E2F1/HSPA1A/AXL/CAV1/MSH2/CASP3/CCNE1/YAP1/FOXM1/FN1/GAPDH/MSH6/SMAD4/SERPINE1/PIK3CA/RET/RPS6/XRCC1/RAB11A/WWTR1/RICTOR/TP53BP1/RAD50
## GO:0044423                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
## GO:0110165 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB2/ERBB3/NF2/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/TFRC/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/DIABLO/AKT1S1/BID/ERCC1/CHEK2/MYH11/INPP4B/YWHAB/PRKCD/RAB25/PRRT2/MACC1/ACACA/SMAD1/E2F1/HSPA1A/PREX1/AXL/PTK2/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ANXA7/ASNS/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD4/PRDX1/SERPINE1/PIK3CA/RET/RPS6/RPS6KB1/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     2     2/125
## GO:0003824 GO:0003824           catalytic activity    59    59/125
## GO:0005198 GO:0005198 structural molecule activity     4     4/125
## GO:0005215 GO:0005215         transporter activity     2     2/125
## GO:0005488 GO:0005488                      binding   125   125/125
## GO:0009055 GO:0009055   electron transfer activity     0     0/125
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       geneID
## GO:0003774                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        MYH9/MYH11
## GO:0003824                                                                                                                                                                                                                                                                                                                                                                                                    MET/BAP1/AKT2/PTEN/G6PD/KIT/NCOA3/KRAS/NRAS/ADAR/CCND1/CDKN1A/EGFR/PIK3R1/EZH2/RAF1/PTGS2/AKT1/PARP1/XIAP/CHEK1/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/MAPK8/RAD51/TUBA1B/EEF2K/ERCC1/CHEK2/INPP4B/PRKCD/RAB25/ACACA/HSPA1A/CASP9/AXL/PTK2/MSH2/CASP3/CCNE1/MAPK9/ASNS/CDK1/EEF2/GAPDH/MSH6/PIK3CA/MAPK3/RET/RPS6KB1/XRCC1/RAB11A/NEK7/FASN/BRAF/RAD50
## GO:0005198                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TUBA1B/MYH11/FN1/RPS6
## GO:0005215                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        BCL2/IGF1R
## GO:0005488 ESR1/MET/BAP1/ERRFI1/AKT2/PTEN/G6PD/BCL2/KIT/NCOA3/ERBB3/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/STAT5A/STAT3/PARP1/XIAP/AR/CHEK1/DVL3/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/YWHAE/ARID1A/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/AKT1S1/BID/ERCC1/CHEK2/MYH11/INPP4B/YWHAB/PRKCD/RAB25/PRRT2/ACACA/E2F1/HSPA1A/CASP9/PREX1/AXL/PTK2/CDKN2A/CAV1/MSH2/CASP3/CCNE1/MAPK9/ANXA1/TFF1/YAP1/ANXA7/ASNS/CDK1/EEF2/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD3/SMAD4/SERPINE1/PIK3CA/MAPK3/RET/RPS6/RPS6KB1/TFRC/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/DIABLO/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50
## GO:0009055                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    33    33/125
## GO:0002376 GO:0002376 immune system process    60    60/125
## GO:0008152 GO:0008152     metabolic process   110   110/125
## GO:0009987 GO:0009987      cellular process   125   125/125
## GO:0016032 GO:0016032         viral process    12    12/125
## GO:0022414 GO:0022414  reproductive process    32    32/125
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       geneID
## GO:0000003                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ESR1/ERRFI1/PTEN/BCL2/KIT/RB1/MYH9/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/BCL2L1/STAT3/PARP1/AR/IGF1R/ITGA2/RAD51/CCNE2/ERCC1/AXL/MSH2/CASP3/CCNE1/CDK1/MSH6/IGFBP2/SMAD4/PIK3CA/RPS6KB1/RAD50
## GO:0002376                                                                                                                                                                                                                                                                                                                                                                                             ESR1/BAP1/G6PD/BCL2/KIT/RB1/ADAR/MYH9/CDKN1A/MYC/PIK3R1/BCL2L11/EZH2/PIK3R2/RAF1/ETS1/FOXO3/YWHAZ/AKT1/STAT3/PARP1/XIAP/IGF1R/ITGA2/MAPT/PRKCA/MAPK1/MAPK8/YWHAE/ARID1A/NDRG1/BID/ERCC1/PRKCD/HSPA1A/PREX1/AXL/PTK2/CAV1/MSH2/CASP3/MAPK9/ANXA1/FN1/GAPDH/MSH6/IGFBP2/SMAD3/SERPINE1/PIK3CA/MAPK3/RET/RPS6KB1/TFRC/SQSTM1/GAB2/NEK7/TP53BP1/BRAF/LCN2
## GO:0008152                                                                                            ESR1/MET/BAP1/ERRFI1/AKT2/PTEN/G6PD/BCL2/KIT/NCOA3/ERBB3/KRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/EZH2/PIK3R2/RAF1/PTGS2/ETS1/SHC1/FOXO3/YWHAZ/AKT1/STAT5A/STAT3/PARP1/XIAP/AR/CHEK1/DVL3/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/RAD51/SRSF1/YWHAE/ARID1A/CCNE2/EEF2K/AKT1S1/BID/ERCC1/CHEK2/INPP4B/YWHAB/PRKCD/ACACA/E2F1/HSPA1A/CASP9/PREX1/AXL/PTK2/CDKN2A/CAV1/MSH2/CASP3/CCNE1/MAPK9/ANXA1/TFF1/YAP1/ANXA7/ASNS/CDK1/EEF2/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/SMAD3/SMAD4/SERPINE1/PIK3CA/MAPK3/RET/RPS6/RPS6KB1/TFRC/XRCC1/SQSTM1/WWTR1/DIABLO/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50
## GO:0009987 ESR1/MET/BAP1/ERRFI1/AKT2/PTEN/G6PD/BCL2/KIT/NCOA3/ERBB3/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/STAT5A/STAT3/PARP1/XIAP/AR/CHEK1/DVL3/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/YWHAE/ARID1A/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/AKT1S1/BID/ERCC1/CHEK2/MYH11/INPP4B/YWHAB/PRKCD/RAB25/PRRT2/ACACA/E2F1/HSPA1A/CASP9/PREX1/AXL/PTK2/CDKN2A/CAV1/MSH2/CASP3/CCNE1/MAPK9/ANXA1/TFF1/YAP1/ANXA7/ASNS/CDK1/EEF2/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD3/SMAD4/SERPINE1/PIK3CA/MAPK3/RET/RPS6/RPS6KB1/TFRC/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/DIABLO/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50
## GO:0016032                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     BCL2/ADAR/EGFR/JUN/AKT1/GSK3B/ITGA2/HSPA1A/AXL/CAV1/CDK1/TFRC
## GO:0022414                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ESR1/ERRFI1/PTEN/BCL2/KIT/RB1/MYH9/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/BCL2L1/PARP1/AR/IGF1R/ITGA2/RAD51/CCNE2/ERCC1/AXL/MSH2/CASP3/CCNE1/CDK1/MSH6/IGFBP2/SMAD4/PIK3CA/RPS6KB1/RAD50
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    82    82/125
## GO:0044423 GO:0044423           virion component     0     0/125
## GO:0110165 GO:0110165 cellular anatomical entity   125   125/125
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       geneID
## GO:0032991                                                                                                                                                                                                                                                           ESR1/MET/BAP1/BCL2/KIT/NCOA3/ERBB3/RB1/ADAR/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/PTGS2/ETS1/SHC1/FOXO3/AKT1/BCL2L1/STAT5A/STAT3/PARP1/AR/CHEK1/DVL3/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/PXN/RAD51/SRSF1/ARID1A/PEA15/CCNE2/AKT1S1/ERCC1/MYH11/E2F1/HSPA1A/CASP9/AXL/CDKN2A/CAV1/MSH2/CASP3/CCNE1/YAP1/CDK1/EEF2/FOXM1/FN1/GAPDH/MSH6/SMAD3/SMAD4/SERPINE1/PIK3CA/RET/RPS6/TFRC/XRCC1/RAB11A/WWTR1/DIABLO/RICTOR/TP53BP1/RAD50
## GO:0044423                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
## GO:0110165 ESR1/MET/BAP1/ERRFI1/AKT2/PTEN/G6PD/BCL2/KIT/NCOA3/ERBB3/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/STAT5A/STAT3/PARP1/XIAP/AR/CHEK1/DVL3/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/YWHAE/ARID1A/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/AKT1S1/BID/ERCC1/CHEK2/MYH11/INPP4B/YWHAB/PRKCD/RAB25/PRRT2/ACACA/E2F1/HSPA1A/CASP9/PREX1/AXL/PTK2/CDKN2A/CAV1/MSH2/CASP3/CCNE1/MAPK9/ANXA1/TFF1/YAP1/ANXA7/ASNS/CDK1/EEF2/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD3/SMAD4/SERPINE1/PIK3CA/MAPK3/RET/RPS6/RPS6KB1/TFRC/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/DIABLO/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     2     2/130
## GO:0003824 GO:0003824           catalytic activity    60    60/130
## GO:0005198 GO:0005198 structural molecule activity     4     4/130
## GO:0005215 GO:0005215         transporter activity     2     2/130
## GO:0005488 GO:0005488                      binding   130   130/130
## GO:0009055 GO:0009055   electron transfer activity     0     0/130
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  geneID
## GO:0003774                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   MYH9/MYH11
## GO:0003824                                                                                                                                                                                                                                                                                                                                                                                                                           AKT2/BAP1/MET/PTEN/G6PD/KIT/NCOA3/ERBB2/KRAS/NRAS/ADAR/CCND1/CDKN1A/EGFR/PIK3R1/EZH2/RAF1/PTGS2/AKT1/ATM/PARP1/XIAP/CASP8/CDK1/CHEK1/EEF2/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/MAPK8/RAD51/TUBA1B/EEF2K/ERCC1/CHEK2/INPP4B/PRKCD/RAB25/ACACA/HSPA1A/AXL/PTK2/MSH2/CASP3/CCNE1/ASNS/GAPDH/MSH6/PRDX1/PIK3CA/RET/RPS6KB1/XRCC1/RAB11A/NEK7/FASN/BRAF/RAD50
## GO:0005198                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TUBA1B/MYH11/FN1/RPS6
## GO:0005215                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   BCL2/IGF1R
## GO:0005488 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB2/ERBB3/NF2/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/TFRC/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/DIABLO/AKT1S1/BID/ERCC1/CHEK2/MYH11/INPP4B/YWHAB/PRKCD/RAB25/PRRT2/MACC1/ACACA/SMAD1/E2F1/HSPA1A/PREX1/AXL/PTK2/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ANXA7/ASNS/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD4/PRDX1/SERPINE1/PIK3CA/RET/RPS6/RPS6KB1/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50
## GO:0009055                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    38    38/130
## GO:0002376 GO:0002376 immune system process    64    64/130
## GO:0008152 GO:0008152     metabolic process   115   115/130
## GO:0009987 GO:0009987      cellular process   130   130/130
## GO:0016032 GO:0016032         viral process    14    14/130
## GO:0022414 GO:0022414  reproductive process    37    37/130
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  geneID
## GO:0000003                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ESR1/ERRFI1/PTEN/NOTCH1/BCL2/KIT/RB1/MYH9/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/BCL2L1/ATM/STAT3/PARP1/AR/CASP8/CDK1/CTNNB1/IGF1R/ITGA2/RAD51/CCNE2/ERCC1/SMAD1/AXL/MSH2/CASP3/CCNE1/MSH6/IGFBP2/SMAD4/PIK3CA/RPS6KB1/RAD50
## GO:0002376                                                                                                                                                                                                                                                                                                                                                                                                ESR1/BAP1/NOTCH1/G6PD/BCL2/KIT/ERBB2/RB1/ADAR/MYH9/CDKN1A/MYC/PIK3R1/BCL2L11/EZH2/PIK3R2/RAF1/ETS1/FOXO3/YWHAZ/AKT1/ATM/STAT3/PARP1/XIAP/CASP8/CTNNB1/IGF1R/ITGA2/MAPT/PRKCA/MAPK1/MAPK8/TFRC/YWHAE/ARID1A/BECN1/NDRG1/BID/ERCC1/PRKCD/HSPA1A/PREX1/AXL/PTK2/CAV1/MSH2/CASP3/ANXA1/FN1/GAPDH/MSH6/IGFBP2/PRDX1/SERPINE1/PIK3CA/RET/RPS6KB1/SQSTM1/GAB2/NEK7/TP53BP1/BRAF/LCN2
## GO:0008152                                                                                            ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB2/ERBB3/NF2/KRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/EZH2/PIK3R2/RAF1/PTGS2/ETS1/SHC1/FOXO3/YWHAZ/AKT1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/RAD51/SRSF1/TFRC/YWHAE/ARID1A/BECN1/CCNE2/EEF2K/DIABLO/AKT1S1/BID/ERCC1/CHEK2/INPP4B/YWHAB/PRKCD/MACC1/ACACA/SMAD1/E2F1/HSPA1A/PREX1/AXL/PTK2/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ANXA7/ASNS/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/SMAD4/PRDX1/SERPINE1/PIK3CA/RET/RPS6/RPS6KB1/XRCC1/SQSTM1/WWTR1/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50
## GO:0009987 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB2/ERBB3/NF2/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/TFRC/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/DIABLO/AKT1S1/BID/ERCC1/CHEK2/MYH11/INPP4B/YWHAB/PRKCD/RAB25/PRRT2/MACC1/ACACA/SMAD1/E2F1/HSPA1A/PREX1/AXL/PTK2/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ANXA7/ASNS/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD4/PRDX1/SERPINE1/PIK3CA/RET/RPS6/RPS6KB1/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50
## GO:0016032                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   NOTCH1/BCL2/ADAR/EGFR/JUN/AKT1/CDK1/GSK3B/ITGA2/TFRC/BECN1/HSPA1A/AXL/CAV1
## GO:0022414                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ESR1/ERRFI1/PTEN/NOTCH1/BCL2/KIT/RB1/MYH9/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/BCL2L1/ATM/PARP1/AR/CASP8/CDK1/CTNNB1/IGF1R/ITGA2/RAD51/CCNE2/ERCC1/SMAD1/AXL/MSH2/CASP3/CCNE1/MSH6/IGFBP2/SMAD4/PIK3CA/RPS6KB1/RAD50
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    86    86/130
## GO:0044423 GO:0044423           virion component     0     0/130
## GO:0110165 GO:0110165 cellular anatomical entity   130   130/130
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  geneID
## GO:0032991                                                                                                                                                                                                                                                               ESR1/BAP1/MET/NOTCH1/BCL2/KIT/NCOA3/ERBB2/ERBB3/RB1/ADAR/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/PTGS2/ETS1/SHC1/FOXO3/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/PXN/RAD51/SRSF1/TFRC/ARID1A/BECN1/PEA15/CCNE2/DIABLO/AKT1S1/ERCC1/MYH11/SMAD1/E2F1/HSPA1A/AXL/CAV1/MSH2/CASP3/CCNE1/YAP1/FOXM1/FN1/GAPDH/MSH6/SMAD4/SERPINE1/PIK3CA/RET/RPS6/XRCC1/RAB11A/WWTR1/RICTOR/TP53BP1/RAD50
## GO:0044423                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
## GO:0110165 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB2/ERBB3/NF2/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/TFRC/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/DIABLO/AKT1S1/BID/ERCC1/CHEK2/MYH11/INPP4B/YWHAB/PRKCD/RAB25/PRRT2/MACC1/ACACA/SMAD1/E2F1/HSPA1A/PREX1/AXL/PTK2/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ANXA7/ASNS/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD4/PRDX1/SERPINE1/PIK3CA/RET/RPS6/RPS6KB1/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     2     2/138
## GO:0003824 GO:0003824           catalytic activity    64    64/138
## GO:0005198 GO:0005198 structural molecule activity     4     4/138
## GO:0005215 GO:0005215         transporter activity     2     2/138
## GO:0005488 GO:0005488                      binding   138   138/138
## GO:0009055 GO:0009055   electron transfer activity     0     0/138
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 geneID
## GO:0003774                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  MYH9/MYH11
## GO:0003824                                                                                                                                                                                                                                                                                                                                                                                                                                                 AKT2/BAP1/MET/PTEN/G6PD/KIT/NCOA3/KRAS/NRAS/ADAR/CCND1/CDKN1A/EGFR/PIK3R1/EZH2/RAF1/PTGS2/AKT1/ATM/PARP1/XIAP/CASP8/CDK1/CHEK1/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/MAPK8/RAD51/TUBA1B/EEF2K/ERCC1/ACVRL1/CHEK2/INPP4B/PRKCD/RAB25/ACACA/ERBB2/HSPA1A/CASP9/AXL/PTK2/MSH2/CASP3/CCNE1/MAPK9/ASNS/EEF2/GAPDH/MSH6/PRDX1/PIK3CA/MAPK3/RET/RPS6KB1/XRCC1/RAB11A/NEK7/FASN/BRAF/RAD50
## GO:0005198                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TUBA1B/MYH11/FN1/RPS6
## GO:0005215                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  BCL2/IGF1R
## GO:0005488 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB3/NF2/E2F1/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/AKT1S1/BID/ERCC1/ACVRL1/CHEK2/MYH11/INPP4B/YWHAB/PRKCD/RAB25/PRRT2/ACACA/ERBB2/HSPA1A/CASP9/PREX1/AXL/PTK2/CDKN2A/CAV1/MSH2/CASP3/CCNE1/MAPK9/ANXA1/TFF1/TP53/YAP1/XBP1/ANXA7/ASNS/EEF2/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD3/SMAD4/PRDX1/SERPINE1/PIK3CA/MAPK3/RET/RPS6/RPS6KB1/TFRC/VASP/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/DIABLO/NEK7/RICTOR/PTCH1/TP53BP1/FASN/BRAF/LCN2/RAD50
## GO:0009055                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    38    38/138
## GO:0002376 GO:0002376 immune system process    69    69/138
## GO:0008152 GO:0008152     metabolic process   122   122/138
## GO:0009987 GO:0009987      cellular process   138   138/138
## GO:0016032 GO:0016032         viral process    15    15/138
## GO:0022414 GO:0022414  reproductive process    37    37/138
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 geneID
## GO:0000003                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ESR1/ERRFI1/PTEN/NOTCH1/BCL2/KIT/RB1/MYH9/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/BCL2L1/ATM/STAT3/PARP1/AR/CASP8/CDK1/CTNNB1/IGF1R/ITGA2/RAD51/CCNE2/ERCC1/AXL/MSH2/CASP3/CCNE1/MSH6/IGFBP2/SMAD4/PIK3CA/RPS6KB1/PTCH1/RAD50
## GO:0002376                                                                                                                                                                                                                                                                                                                                                                                                                   ESR1/BAP1/NOTCH1/G6PD/BCL2/KIT/RB1/ADAR/MYH9/CDKN1A/MYC/PIK3R1/BCL2L11/EZH2/PIK3R2/RAF1/ETS1/FOXO3/YWHAZ/AKT1/ATM/STAT3/PARP1/XIAP/CASP8/CTNNB1/IGF1R/ITGA2/MAPT/PRKCA/MAPK1/MAPK8/YWHAE/ARID1A/BECN1/NDRG1/BID/ERCC1/PRKCD/ERBB2/HSPA1A/PREX1/AXL/PTK2/CAV1/MSH2/CASP3/MAPK9/ANXA1/TP53/XBP1/FN1/GAPDH/MSH6/IGFBP2/SMAD3/PRDX1/SERPINE1/PIK3CA/MAPK3/RET/RPS6KB1/TFRC/SQSTM1/GAB2/NEK7/TP53BP1/BRAF/LCN2
## GO:0008152                                                                                                 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB3/NF2/E2F1/KRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/EZH2/PIK3R2/RAF1/PTGS2/ETS1/SHC1/FOXO3/YWHAZ/AKT1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/RAD51/SRSF1/YWHAE/ARID1A/BECN1/CCNE2/EEF2K/AKT1S1/BID/ERCC1/ACVRL1/CHEK2/INPP4B/YWHAB/PRKCD/ACACA/ERBB2/HSPA1A/CASP9/PREX1/AXL/PTK2/CDKN2A/CAV1/MSH2/CASP3/CCNE1/MAPK9/ANXA1/TFF1/TP53/YAP1/XBP1/ANXA7/ASNS/EEF2/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/SMAD3/SMAD4/PRDX1/SERPINE1/PIK3CA/MAPK3/RET/RPS6/RPS6KB1/TFRC/XRCC1/SQSTM1/WWTR1/DIABLO/NEK7/RICTOR/PTCH1/TP53BP1/FASN/BRAF/LCN2/RAD50
## GO:0009987 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB3/NF2/E2F1/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/AKT1S1/BID/ERCC1/ACVRL1/CHEK2/MYH11/INPP4B/YWHAB/PRKCD/RAB25/PRRT2/ACACA/ERBB2/HSPA1A/CASP9/PREX1/AXL/PTK2/CDKN2A/CAV1/MSH2/CASP3/CCNE1/MAPK9/ANXA1/TFF1/TP53/YAP1/XBP1/ANXA7/ASNS/EEF2/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD3/SMAD4/PRDX1/SERPINE1/PIK3CA/MAPK3/RET/RPS6/RPS6KB1/TFRC/VASP/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/DIABLO/NEK7/RICTOR/PTCH1/TP53BP1/FASN/BRAF/LCN2/RAD50
## GO:0016032                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             NOTCH1/BCL2/ADAR/EGFR/JUN/AKT1/CDK1/GSK3B/ITGA2/BECN1/HSPA1A/AXL/CAV1/TP53/TFRC
## GO:0022414                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ESR1/ERRFI1/PTEN/NOTCH1/BCL2/KIT/RB1/MYH9/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/BCL2L1/ATM/PARP1/AR/CASP8/CDK1/CTNNB1/IGF1R/ITGA2/RAD51/CCNE2/ERCC1/AXL/MSH2/CASP3/CCNE1/MSH6/IGFBP2/SMAD4/PIK3CA/RPS6KB1/PTCH1/RAD50
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    91    91/138
## GO:0044423 GO:0044423           virion component     0     0/138
## GO:0110165 GO:0110165 cellular anatomical entity   138   138/138
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 geneID
## GO:0032991                                                                                                                                                                                                                                                                                ESR1/BAP1/MET/NOTCH1/BCL2/KIT/NCOA3/ERBB3/E2F1/RB1/ADAR/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/PTGS2/ETS1/SHC1/FOXO3/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/PXN/RAD51/SRSF1/ARID1A/BECN1/PEA15/CCNE2/AKT1S1/ERCC1/ACVRL1/MYH11/ERBB2/HSPA1A/CASP9/AXL/CDKN2A/CAV1/MSH2/CASP3/CCNE1/TP53/YAP1/XBP1/EEF2/FOXM1/FN1/GAPDH/MSH6/SMAD3/SMAD4/SERPINE1/PIK3CA/RET/RPS6/TFRC/XRCC1/RAB11A/WWTR1/DIABLO/RICTOR/TP53BP1/RAD50
## GO:0044423                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
## GO:0110165 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB3/NF2/E2F1/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/AKT1S1/BID/ERCC1/ACVRL1/CHEK2/MYH11/INPP4B/YWHAB/PRKCD/RAB25/PRRT2/ACACA/ERBB2/HSPA1A/CASP9/PREX1/AXL/PTK2/CDKN2A/CAV1/MSH2/CASP3/CCNE1/MAPK9/ANXA1/TFF1/TP53/YAP1/XBP1/ANXA7/ASNS/EEF2/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD3/SMAD4/PRDX1/SERPINE1/PIK3CA/MAPK3/RET/RPS6/RPS6KB1/TFRC/VASP/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/DIABLO/NEK7/RICTOR/PTCH1/TP53BP1/FASN/BRAF/LCN2/RAD50
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     2     2/142
## GO:0003824 GO:0003824           catalytic activity    64    64/142
## GO:0005198 GO:0005198 structural molecule activity     6     6/142
## GO:0005215 GO:0005215         transporter activity     2     2/142
## GO:0005488 GO:0005488                      binding   142   142/142
## GO:0009055 GO:0009055   electron transfer activity     0     0/142
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      geneID
## GO:0003774                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       MYH9/MYH11
## GO:0003824                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AKT2/BAP1/MET/PTEN/G6PD/KIT/NCOA3/ERBB2/KRAS/NRAS/ADAR/CCND1/CDKN1A/EGFR/PIK3R1/EZH2/RAF1/PTGS2/AKT1/ATM/PARP1/XIAP/CASP8/CDK1/CHEK1/EEF2/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/MAPK8/RAD51/TUBA1B/EEF2K/ERCC1/CHEK2/INPP4B/PRKCD/RAB25/ACACA/HSPA1A/AXL/PTK2/MSH2/CASP3/CCNE1/ASNS/GAPDH/MSH6/PRDX1/PIK3CA/RET/RPS6KB1/XRCC1/RAB11A/NEK7/FASN/BRAF/RAD50/TGM2/DIRAS3/VHL/ACVRL1
## GO:0005198                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TUBA1B/MYH11/FN1/RPS6/COL6A1/CTNNA1
## GO:0005215                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       BCL2/IGF1R
## GO:0005488 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB2/ERBB3/NF2/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/TFRC/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/DIABLO/AKT1S1/BID/ERCC1/CHEK2/MYH11/INPP4B/YWHAB/PRKCD/RAB25/PRRT2/MACC1/ACACA/SMAD1/E2F1/HSPA1A/PREX1/AXL/PTK2/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ANXA7/ASNS/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD4/PRDX1/SERPINE1/PIK3CA/RET/RPS6/RPS6KB1/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50/SYP/TGM2/COL6A1/CDH2/DIRAS3/CTNNA1/GATA3/TTF1/RBM15/TSC1/VHL/ACVRL1
## GO:0009055                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    42    42/142
## GO:0002376 GO:0002376 immune system process    67    67/142
## GO:0008152 GO:0008152     metabolic process   124   124/142
## GO:0009987 GO:0009987      cellular process   142   142/142
## GO:0016032 GO:0016032         viral process    14    14/142
## GO:0022414 GO:0022414  reproductive process    41    41/142
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      geneID
## GO:0000003                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ESR1/ERRFI1/PTEN/NOTCH1/BCL2/KIT/RB1/MYH9/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/BCL2L1/ATM/STAT3/PARP1/AR/CASP8/CDK1/CTNNB1/IGF1R/ITGA2/RAD51/CCNE2/ERCC1/SMAD1/AXL/MSH2/CASP3/CCNE1/MSH6/IGFBP2/SMAD4/PIK3CA/RPS6KB1/RAD50/COL6A1/DIRAS3/CTNNA1/GATA3
## GO:0002376                                                                                                                                                                                                                                                                                                                                                                                                                                                   ESR1/BAP1/NOTCH1/G6PD/BCL2/KIT/ERBB2/RB1/ADAR/MYH9/CDKN1A/MYC/PIK3R1/BCL2L11/EZH2/PIK3R2/RAF1/ETS1/FOXO3/YWHAZ/AKT1/ATM/STAT3/PARP1/XIAP/CASP8/CTNNB1/IGF1R/ITGA2/MAPT/PRKCA/MAPK1/MAPK8/TFRC/YWHAE/ARID1A/BECN1/NDRG1/BID/ERCC1/PRKCD/HSPA1A/PREX1/AXL/PTK2/CAV1/MSH2/CASP3/ANXA1/FN1/GAPDH/MSH6/IGFBP2/PRDX1/SERPINE1/PIK3CA/RET/RPS6KB1/SQSTM1/GAB2/NEK7/TP53BP1/BRAF/LCN2/GATA3/RBM15/TSC1
## GO:0008152                                                                                                            ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB2/ERBB3/NF2/KRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/EZH2/PIK3R2/RAF1/PTGS2/ETS1/SHC1/FOXO3/YWHAZ/AKT1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/RAD51/SRSF1/TFRC/YWHAE/ARID1A/BECN1/CCNE2/EEF2K/DIABLO/AKT1S1/BID/ERCC1/CHEK2/INPP4B/YWHAB/PRKCD/MACC1/ACACA/SMAD1/E2F1/HSPA1A/PREX1/AXL/PTK2/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ANXA7/ASNS/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/SMAD4/PRDX1/SERPINE1/PIK3CA/RET/RPS6/RPS6KB1/XRCC1/SQSTM1/WWTR1/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50/TGM2/COL6A1/DIRAS3/GATA3/TTF1/RBM15/TSC1/VHL/ACVRL1
## GO:0009987 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB2/ERBB3/NF2/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/TFRC/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/DIABLO/AKT1S1/BID/ERCC1/CHEK2/MYH11/INPP4B/YWHAB/PRKCD/RAB25/PRRT2/MACC1/ACACA/SMAD1/E2F1/HSPA1A/PREX1/AXL/PTK2/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ANXA7/ASNS/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD4/PRDX1/SERPINE1/PIK3CA/RET/RPS6/RPS6KB1/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50/SYP/TGM2/COL6A1/CDH2/DIRAS3/CTNNA1/GATA3/TTF1/RBM15/TSC1/VHL/ACVRL1
## GO:0016032                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       NOTCH1/BCL2/ADAR/EGFR/JUN/AKT1/CDK1/GSK3B/ITGA2/TFRC/BECN1/HSPA1A/AXL/CAV1
## GO:0022414                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ESR1/ERRFI1/PTEN/NOTCH1/BCL2/KIT/RB1/MYH9/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/BCL2L1/ATM/PARP1/AR/CASP8/CDK1/CTNNB1/IGF1R/ITGA2/RAD51/CCNE2/ERCC1/SMAD1/AXL/MSH2/CASP3/CCNE1/MSH6/IGFBP2/SMAD4/PIK3CA/RPS6KB1/RAD50/COL6A1/DIRAS3/CTNNA1/GATA3
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    94    94/142
## GO:0044423 GO:0044423           virion component     0     0/142
## GO:0110165 GO:0110165 cellular anatomical entity   142   142/142
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      geneID
## GO:0032991                                                                                                                                                                                                                                                                                   ESR1/BAP1/MET/NOTCH1/BCL2/KIT/NCOA3/ERBB2/ERBB3/RB1/ADAR/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/PTGS2/ETS1/SHC1/FOXO3/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/PXN/RAD51/SRSF1/TFRC/ARID1A/BECN1/PEA15/CCNE2/DIABLO/AKT1S1/ERCC1/MYH11/SMAD1/E2F1/HSPA1A/AXL/CAV1/MSH2/CASP3/CCNE1/YAP1/FOXM1/FN1/GAPDH/MSH6/SMAD4/SERPINE1/PIK3CA/RET/RPS6/XRCC1/RAB11A/WWTR1/RICTOR/TP53BP1/RAD50/TGM2/COL6A1/CDH2/CTNNA1/GATA3/RBM15/TSC1/ACVRL1
## GO:0044423                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
## GO:0110165 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB2/ERBB3/NF2/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/TFRC/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/DIABLO/AKT1S1/BID/ERCC1/CHEK2/MYH11/INPP4B/YWHAB/PRKCD/RAB25/PRRT2/MACC1/ACACA/SMAD1/E2F1/HSPA1A/PREX1/AXL/PTK2/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/ANXA7/ASNS/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD4/PRDX1/SERPINE1/PIK3CA/RET/RPS6/RPS6KB1/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50/SYP/TGM2/COL6A1/CDH2/DIRAS3/CTNNA1/GATA3/TTF1/RBM15/TSC1/VHL/ACVRL1
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     2     2/137
## GO:0003824 GO:0003824           catalytic activity    63    63/137
## GO:0005198 GO:0005198 structural molecule activity     5     5/137
## GO:0005215 GO:0005215         transporter activity     2     2/137
## GO:0005488 GO:0005488                      binding   137   137/137
## GO:0009055 GO:0009055   electron transfer activity     0     0/137
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     geneID
## GO:0003774                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      MYH9/MYH11
## GO:0003824                                                                                                                                                                                                                                                                                                                                                                                                                                               MET/BAP1/AKT2/PTEN/G6PD/KIT/NCOA3/KRAS/NRAS/ADAR/CCND1/CDKN1A/EGFR/PIK3R1/EZH2/RAF1/PTGS2/AKT1/PARP1/XIAP/CHEK1/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/MAPK8/RAD51/TUBA1B/EEF2K/ERCC1/CHEK2/PRKCD/RAB25/ACACA/HSPA1A/CASP9/AXL/PTK2/MSH2/CASP3/CCNE1/MAPK9/ASNS/CDK1/EEF2/GAPDH/MSH6/PRDX1/PIK3CA/MAPK3/RET/RPS6KB1/XRCC1/RAB11A/NEK7/INPP4B/FASN/BRAF/RAD50/TGM2/ATM/VHL
## GO:0005198                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TUBA1B/MYH11/FN1/RPS6/COL6A1
## GO:0005215                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      BCL2/IGF1R
## GO:0005488 ESR1/MET/BAP1/ERRFI1/AKT2/PTEN/G6PD/BCL2/KIT/NCOA3/ERBB3/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/STAT5A/STAT3/PARP1/XIAP/AR/CHEK1/DVL3/EIF4E/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/YWHAE/ARID1A/PEA15/CCNE2/TUBA1B/EEF2K/AKT1S1/BID/ERCC1/CHEK2/MYH11/YWHAB/PRKCD/RAB25/PRRT2/ACACA/E2F1/HSPA1A/CASP9/AXL/PTK2/CDKN2A/CAV1/MSH2/CASP3/CCNE1/MAPK9/ANXA1/TFF1/YAP1/ASNS/CDK1/CTNNB1/EEF2/EIF4EBP1/EIF4G1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD3/SMAD4/PRDX1/PIK3CA/MAPK3/RET/RPS6/RPS6KB1/TFRC/XRCC1/RAB11A/SQSTM1/GAB2/NDRG1/WWTR1/ANLN/DIABLO/NEK7/RICTOR/INPP4B/TP53BP1/FASN/BRAF/LCN2/RAD50/SYP/CDH2/COL6A1/SERPINE1/TGM2/GATA3/ATM/RBM15/VHL/NF2/TSC1/PREX1/TTF1
## GO:0009055                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    37    37/137
## GO:0002376 GO:0002376 immune system process    66    66/137
## GO:0008152 GO:0008152     metabolic process   120   120/137
## GO:0009987 GO:0009987      cellular process   137   137/137
## GO:0016032 GO:0016032         viral process    12    12/137
## GO:0022414 GO:0022414  reproductive process    36    36/137
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     geneID
## GO:0000003                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ESR1/ERRFI1/PTEN/BCL2/KIT/RB1/MYH9/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/BCL2L1/STAT3/PARP1/AR/IGF1R/ITGA2/RAD51/CCNE2/ERCC1/AXL/MSH2/CASP3/CCNE1/CDK1/CTNNB1/MSH6/IGFBP2/SMAD4/PIK3CA/RPS6KB1/RAD50/COL6A1/GATA3/ATM
## GO:0002376                                                                                                                                                                                                                                                                                                                                                                                                                         ESR1/BAP1/G6PD/BCL2/KIT/RB1/ADAR/MYH9/CDKN1A/MYC/PIK3R1/BCL2L11/EZH2/PIK3R2/RAF1/ETS1/FOXO3/YWHAZ/AKT1/STAT3/PARP1/XIAP/IGF1R/ITGA2/MAPT/PRKCA/MAPK1/MAPK8/YWHAE/ARID1A/BID/ERCC1/PRKCD/HSPA1A/AXL/PTK2/CAV1/MSH2/CASP3/MAPK9/ANXA1/CTNNB1/FN1/GAPDH/MSH6/IGFBP2/SMAD3/PRDX1/PIK3CA/MAPK3/RET/RPS6KB1/TFRC/SQSTM1/GAB2/NDRG1/NEK7/TP53BP1/BRAF/LCN2/SERPINE1/GATA3/ATM/RBM15/TSC1/PREX1
## GO:0008152                                                                                                     ESR1/MET/BAP1/ERRFI1/AKT2/PTEN/G6PD/BCL2/KIT/NCOA3/ERBB3/KRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/EZH2/PIK3R2/RAF1/PTGS2/ETS1/SHC1/FOXO3/YWHAZ/AKT1/STAT5A/STAT3/PARP1/XIAP/AR/CHEK1/DVL3/EIF4E/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/RAD51/SRSF1/YWHAE/ARID1A/CCNE2/EEF2K/AKT1S1/BID/ERCC1/CHEK2/YWHAB/PRKCD/ACACA/E2F1/HSPA1A/CASP9/AXL/PTK2/CDKN2A/CAV1/MSH2/CASP3/CCNE1/MAPK9/ANXA1/TFF1/YAP1/ASNS/CDK1/CTNNB1/EEF2/EIF4EBP1/EIF4G1/FOXM1/FN1/GAPDH/MSH6/SMAD3/SMAD4/PRDX1/PIK3CA/MAPK3/RET/RPS6/RPS6KB1/TFRC/XRCC1/SQSTM1/WWTR1/DIABLO/NEK7/RICTOR/INPP4B/TP53BP1/FASN/BRAF/LCN2/RAD50/COL6A1/SERPINE1/TGM2/GATA3/ATM/RBM15/VHL/NF2/TSC1/PREX1/TTF1
## GO:0009987 ESR1/MET/BAP1/ERRFI1/AKT2/PTEN/G6PD/BCL2/KIT/NCOA3/ERBB3/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/STAT5A/STAT3/PARP1/XIAP/AR/CHEK1/DVL3/EIF4E/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/YWHAE/ARID1A/PEA15/CCNE2/TUBA1B/EEF2K/AKT1S1/BID/ERCC1/CHEK2/MYH11/YWHAB/PRKCD/RAB25/PRRT2/ACACA/E2F1/HSPA1A/CASP9/AXL/PTK2/CDKN2A/CAV1/MSH2/CASP3/CCNE1/MAPK9/ANXA1/TFF1/YAP1/ASNS/CDK1/CTNNB1/EEF2/EIF4EBP1/EIF4G1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD3/SMAD4/PRDX1/PIK3CA/MAPK3/RET/RPS6/RPS6KB1/TFRC/XRCC1/RAB11A/SQSTM1/GAB2/NDRG1/WWTR1/ANLN/DIABLO/NEK7/RICTOR/INPP4B/TP53BP1/FASN/BRAF/LCN2/RAD50/SYP/CDH2/COL6A1/SERPINE1/TGM2/GATA3/ATM/RBM15/VHL/NF2/TSC1/PREX1/TTF1
## GO:0016032                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   BCL2/ADAR/EGFR/JUN/AKT1/GSK3B/ITGA2/HSPA1A/AXL/CAV1/CDK1/TFRC
## GO:0022414                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ESR1/ERRFI1/PTEN/BCL2/KIT/RB1/MYH9/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/BCL2L1/PARP1/AR/IGF1R/ITGA2/RAD51/CCNE2/ERCC1/AXL/MSH2/CASP3/CCNE1/CDK1/CTNNB1/MSH6/IGFBP2/SMAD4/PIK3CA/RPS6KB1/RAD50/COL6A1/GATA3/ATM
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    90    90/137
## GO:0044423 GO:0044423           virion component     0     0/137
## GO:0110165 GO:0110165 cellular anatomical entity   137   137/137
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     geneID
## GO:0032991                                                                                                                                                                                                                                                                            ESR1/MET/BAP1/BCL2/KIT/NCOA3/ERBB3/RB1/ADAR/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/PTGS2/ETS1/SHC1/FOXO3/AKT1/BCL2L1/STAT5A/STAT3/PARP1/AR/CHEK1/DVL3/EIF4E/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/PXN/RAD51/SRSF1/ARID1A/PEA15/CCNE2/AKT1S1/ERCC1/MYH11/E2F1/HSPA1A/CASP9/AXL/CDKN2A/CAV1/MSH2/CASP3/CCNE1/YAP1/CDK1/CTNNB1/EEF2/EIF4G1/FOXM1/FN1/GAPDH/MSH6/SMAD3/SMAD4/PIK3CA/RET/RPS6/TFRC/XRCC1/RAB11A/WWTR1/DIABLO/RICTOR/TP53BP1/RAD50/CDH2/COL6A1/SERPINE1/TGM2/GATA3/ATM/RBM15/TSC1
## GO:0044423                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
## GO:0110165 ESR1/MET/BAP1/ERRFI1/AKT2/PTEN/G6PD/BCL2/KIT/NCOA3/ERBB3/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/STAT5A/STAT3/PARP1/XIAP/AR/CHEK1/DVL3/EIF4E/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/YWHAE/ARID1A/PEA15/CCNE2/TUBA1B/EEF2K/AKT1S1/BID/ERCC1/CHEK2/MYH11/YWHAB/PRKCD/RAB25/PRRT2/ACACA/E2F1/HSPA1A/CASP9/AXL/PTK2/CDKN2A/CAV1/MSH2/CASP3/CCNE1/MAPK9/ANXA1/TFF1/YAP1/ASNS/CDK1/CTNNB1/EEF2/EIF4EBP1/EIF4G1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD3/SMAD4/PRDX1/PIK3CA/MAPK3/RET/RPS6/RPS6KB1/TFRC/XRCC1/RAB11A/SQSTM1/GAB2/NDRG1/WWTR1/ANLN/DIABLO/NEK7/RICTOR/INPP4B/TP53BP1/FASN/BRAF/LCN2/RAD50/SYP/CDH2/COL6A1/SERPINE1/TGM2/GATA3/ATM/RBM15/VHL/NF2/TSC1/PREX1/TTF1
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     2     2/148
## GO:0003824 GO:0003824           catalytic activity    66    66/148
## GO:0005198 GO:0005198 structural molecule activity     6     6/148
## GO:0005215 GO:0005215         transporter activity     2     2/148
## GO:0005488 GO:0005488                      binding   148   148/148
## GO:0009055 GO:0009055   electron transfer activity     0     0/148
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          geneID
## GO:0003774                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           MYH9/MYH11
## GO:0003824                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AKT2/BAP1/MET/PTEN/G6PD/MAPK14/KIT/NCOA3/ERBB2/KRAS/NRAS/ADAR/PTK2/CCND1/CDKN1A/EGFR/PIK3R1/EZH2/RAF1/PTGS2/AKT1/ATM/PARP1/XIAP/CASP8/CDK1/CHEK1/EEF2/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/MAPK8/RAD51/TUBA1B/EEF2K/ERCC1/CHEK2/INPP4B/RAB11B/PRKCD/RAB25/ACACA/HSPA1A/AXL/MSH2/CASP3/CCNE1/ASNS/GAPDH/MSH6/PRDX1/PIK3CA/RET/RPS6KB1/XRCC1/RAB11A/NEK7/FASN/BRAF/RAD50/TGM2/DIRAS3/VHL/ACVRL1
## GO:0005198                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TUBA1B/MYH11/FN1/RPS6/COL6A1/CTNNA1
## GO:0005215                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           BCL2/IGF1R
## GO:0005488 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/MAPK14/BCL2/KIT/NCOA3/ERBB2/ERBB3/NF2/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/PTK2/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/TFRC/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/DIABLO/AKT1S1/BID/ERCC1/CHEK2/MYH11/INPP4B/YWHAB/RAB11B/PRKCD/RAB25/PRRT2/MACC1/ACACA/SMAD1/E2F1/HSPA1A/PREX1/AXL/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/CDH1/ANXA7/ASNS/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD4/NFE2L2/PRDX1/SERPINE1/PIK3CA/RET/RPS6/RPS6KB1/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/NEK7/RICTOR/TSC2/TP53BP1/FASN/BRAF/LCN2/RAD50/TGM2/SYP/COL6A1/DIRAS3/CTNNA1/CDH2/RBM3/GATA3/TTF1/RBM15/TSC1/VHL/ACVRL1
## GO:0009055                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    42    42/148
## GO:0002376 GO:0002376 immune system process    69    69/148
## GO:0008152 GO:0008152     metabolic process   130   130/148
## GO:0009987 GO:0009987      cellular process   148   148/148
## GO:0016032 GO:0016032         viral process    14    14/148
## GO:0022414 GO:0022414  reproductive process    41    41/148
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          geneID
## GO:0000003                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ESR1/ERRFI1/PTEN/NOTCH1/BCL2/KIT/RB1/MYH9/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/BCL2L1/ATM/STAT3/PARP1/AR/CASP8/CDK1/CTNNB1/IGF1R/ITGA2/RAD51/CCNE2/ERCC1/SMAD1/AXL/MSH2/CASP3/CCNE1/MSH6/IGFBP2/SMAD4/PIK3CA/RPS6KB1/RAD50/COL6A1/DIRAS3/CTNNA1/GATA3
## GO:0002376                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ESR1/BAP1/NOTCH1/G6PD/MAPK14/BCL2/KIT/ERBB2/RB1/ADAR/MYH9/PTK2/CDKN1A/MYC/PIK3R1/BCL2L11/EZH2/PIK3R2/RAF1/ETS1/FOXO3/YWHAZ/AKT1/ATM/STAT3/PARP1/XIAP/CASP8/CTNNB1/IGF1R/ITGA2/MAPT/PRKCA/MAPK1/MAPK8/TFRC/YWHAE/ARID1A/BECN1/NDRG1/BID/ERCC1/PRKCD/HSPA1A/PREX1/AXL/CAV1/MSH2/CASP3/ANXA1/FN1/GAPDH/MSH6/IGFBP2/NFE2L2/PRDX1/SERPINE1/PIK3CA/RET/RPS6KB1/SQSTM1/GAB2/NEK7/TP53BP1/BRAF/LCN2/GATA3/RBM15/TSC1
## GO:0008152                                                                                                            ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/MAPK14/BCL2/KIT/NCOA3/ERBB2/ERBB3/NF2/KRAS/RB1/ADAR/PDCD4/MYH9/PTK2/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/EZH2/PIK3R2/RAF1/PTGS2/ETS1/SHC1/FOXO3/YWHAZ/AKT1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/RAD51/SRSF1/TFRC/YWHAE/ARID1A/BECN1/CCNE2/EEF2K/DIABLO/AKT1S1/BID/ERCC1/CHEK2/INPP4B/YWHAB/RAB11B/PRKCD/MACC1/ACACA/SMAD1/E2F1/HSPA1A/PREX1/AXL/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/CDH1/ANXA7/ASNS/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/SMAD4/NFE2L2/PRDX1/SERPINE1/PIK3CA/RET/RPS6/RPS6KB1/XRCC1/SQSTM1/WWTR1/NEK7/RICTOR/TSC2/TP53BP1/FASN/BRAF/LCN2/RAD50/TGM2/COL6A1/DIRAS3/RBM3/GATA3/TTF1/RBM15/TSC1/VHL/ACVRL1
## GO:0009987 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/MAPK14/BCL2/KIT/NCOA3/ERBB2/ERBB3/NF2/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/PTK2/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/TFRC/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/DIABLO/AKT1S1/BID/ERCC1/CHEK2/MYH11/INPP4B/YWHAB/RAB11B/PRKCD/RAB25/PRRT2/MACC1/ACACA/SMAD1/E2F1/HSPA1A/PREX1/AXL/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/CDH1/ANXA7/ASNS/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD4/NFE2L2/PRDX1/SERPINE1/PIK3CA/RET/RPS6/RPS6KB1/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/NEK7/RICTOR/TSC2/TP53BP1/FASN/BRAF/LCN2/RAD50/TGM2/SYP/COL6A1/DIRAS3/CTNNA1/CDH2/RBM3/GATA3/TTF1/RBM15/TSC1/VHL/ACVRL1
## GO:0016032                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           NOTCH1/BCL2/ADAR/EGFR/JUN/AKT1/CDK1/GSK3B/ITGA2/TFRC/BECN1/HSPA1A/AXL/CAV1
## GO:0022414                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ESR1/ERRFI1/PTEN/NOTCH1/BCL2/KIT/RB1/MYH9/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/BCL2L1/ATM/PARP1/AR/CASP8/CDK1/CTNNB1/IGF1R/ITGA2/RAD51/CCNE2/ERCC1/SMAD1/AXL/MSH2/CASP3/CCNE1/MSH6/IGFBP2/SMAD4/PIK3CA/RPS6KB1/RAD50/COL6A1/DIRAS3/CTNNA1/GATA3
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    98    98/148
## GO:0044423 GO:0044423           virion component     0     0/148
## GO:0110165 GO:0110165 cellular anatomical entity   148   148/148
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          geneID
## GO:0032991                                                                                                                                                                                                                                                                                                 ESR1/BAP1/MET/NOTCH1/BCL2/KIT/NCOA3/ERBB2/ERBB3/RB1/ADAR/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/PTGS2/ETS1/SHC1/FOXO3/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/PXN/RAD51/SRSF1/TFRC/ARID1A/BECN1/PEA15/CCNE2/DIABLO/AKT1S1/ERCC1/MYH11/SMAD1/E2F1/HSPA1A/AXL/CAV1/MSH2/CASP3/CCNE1/YAP1/CDH1/FOXM1/FN1/GAPDH/MSH6/SMAD4/NFE2L2/SERPINE1/PIK3CA/RET/RPS6/XRCC1/RAB11A/WWTR1/RICTOR/TSC2/TP53BP1/RAD50/TGM2/COL6A1/CTNNA1/CDH2/RBM3/GATA3/RBM15/TSC1/ACVRL1
## GO:0044423                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
## GO:0110165 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/MAPK14/BCL2/KIT/NCOA3/ERBB2/ERBB3/NF2/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/PTK2/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EEF2/EIF4E/EIF4G1/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/TFRC/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/DIABLO/AKT1S1/BID/ERCC1/CHEK2/MYH11/INPP4B/YWHAB/RAB11B/PRKCD/RAB25/PRRT2/MACC1/ACACA/SMAD1/E2F1/HSPA1A/PREX1/AXL/CAV1/MSH2/CASP3/CCNE1/ANXA1/TFF1/YAP1/CDH1/ANXA7/ASNS/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD4/NFE2L2/PRDX1/SERPINE1/PIK3CA/RET/RPS6/RPS6KB1/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/NEK7/RICTOR/TSC2/TP53BP1/FASN/BRAF/LCN2/RAD50/TGM2/SYP/COL6A1/DIRAS3/CTNNA1/CDH2/RBM3/GATA3/TTF1/RBM15/TSC1/VHL/ACVRL1
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     2     2/147
## GO:0003824 GO:0003824           catalytic activity    67    67/147
## GO:0005198 GO:0005198 structural molecule activity     5     5/147
## GO:0005215 GO:0005215         transporter activity     2     2/147
## GO:0005488 GO:0005488                      binding   147   147/147
## GO:0009055 GO:0009055   electron transfer activity     0     0/147
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 geneID
## GO:0003774                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  MYH9/MYH11
## GO:0003824                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AKT2/BAP1/MET/PTEN/G6PD/KIT/NCOA3/HSPA1A/KRAS/NRAS/ADAR/PTK2/CCND1/CDKN1A/EGFR/PIK3R1/EZH2/RAF1/PTGS2/AKT1/VHL/ATM/PARP1/XIAP/CASP8/CDK1/CHEK1/MTOR/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/MAPK8/RAD51/TUBA1B/EEF2K/ERCC1/CHEK2/INPP4B/RAB11B/PRKCD/RAB25/ACACA/CASP9/AXL/MSH2/CASP3/CCNE1/MAPK9/ASNS/EEF2/GAPDH/MSH6/PRDX1/PIK3CA/MAPK3/RET/RPS6KB1/XRCC1/RAB11A/NEK7/FASN/BRAF/RAD50/TGM2/DIRAS3
## GO:0005198                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TUBA1B/MYH11/FN1/RPS6/COL6A1
## GO:0005215                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  BCL2/IGF1R
## GO:0005488 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB3/HSPA1A/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/PTK2/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/VHL/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EIF4E/EIF4G1/MTOR/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/AKT1S1/BID/ERCC1/CHEK2/MYH11/INPP4B/YWHAB/RAB11B/PRKCD/RAB25/PRRT2/MACC1/ACACA/E2F1/CASP9/PREX1/AXL/CDKN2A/CAV1/MSH2/CASP3/CCNE1/MAPK9/ANXA1/TFF1/YAP1/CDH1/ANXA7/ASNS/EEF2/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD3/SMAD4/PRDX1/SERPINE1/PIK3CA/MAPK3/RET/RPS6/RPS6KB1/TFRC/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/DIABLO/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50/SYP/COL6A1/CDH2/TGM2/DIRAS3/GATA3/RBM15/TSC1/NF2/TTF1/XBP1
## GO:0009055                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    41    41/147
## GO:0002376 GO:0002376 immune system process    71    71/147
## GO:0008152 GO:0008152     metabolic process   130   130/147
## GO:0009987 GO:0009987      cellular process   147   147/147
## GO:0016032 GO:0016032         viral process    14    14/147
## GO:0022414 GO:0022414  reproductive process    40    40/147
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 geneID
## GO:0000003                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ESR1/ERRFI1/PTEN/NOTCH1/BCL2/KIT/RB1/MYH9/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/BCL2L1/ATM/STAT3/PARP1/AR/CASP8/CDK1/CTNNB1/MTOR/IGF1R/ITGA2/RAD51/CCNE2/ERCC1/AXL/MSH2/CASP3/CCNE1/MSH6/IGFBP2/SMAD4/PIK3CA/RPS6KB1/RAD50/COL6A1/DIRAS3/GATA3
## GO:0002376                                                                                                                                                                                                                                                                                                                                                                                                                                                        ESR1/BAP1/NOTCH1/G6PD/BCL2/KIT/HSPA1A/RB1/ADAR/MYH9/PTK2/CDKN1A/MYC/PIK3R1/BCL2L11/EZH2/PIK3R2/RAF1/ETS1/FOXO3/YWHAZ/AKT1/ATM/STAT3/PARP1/XIAP/CASP8/CTNNB1/MTOR/IGF1R/ITGA2/MAPT/PRKCA/MAPK1/MAPK8/YWHAE/ARID1A/BECN1/NDRG1/BID/ERCC1/PRKCD/PREX1/AXL/CAV1/MSH2/CASP3/MAPK9/ANXA1/FN1/GAPDH/MSH6/IGFBP2/SMAD3/PRDX1/SERPINE1/PIK3CA/MAPK3/RET/RPS6KB1/TFRC/SQSTM1/GAB2/NEK7/TP53BP1/BRAF/LCN2/GATA3/RBM15/TSC1/XBP1
## GO:0008152                                                                                                     ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB3/HSPA1A/KRAS/RB1/ADAR/PDCD4/MYH9/PTK2/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/EZH2/PIK3R2/RAF1/PTGS2/ETS1/SHC1/FOXO3/YWHAZ/AKT1/VHL/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EIF4E/EIF4G1/MTOR/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/RAD51/SRSF1/YWHAE/ARID1A/BECN1/CCNE2/EEF2K/AKT1S1/BID/ERCC1/CHEK2/INPP4B/YWHAB/RAB11B/PRKCD/MACC1/ACACA/E2F1/CASP9/PREX1/AXL/CDKN2A/CAV1/MSH2/CASP3/CCNE1/MAPK9/ANXA1/TFF1/YAP1/CDH1/ANXA7/ASNS/EEF2/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/SMAD3/SMAD4/PRDX1/SERPINE1/PIK3CA/MAPK3/RET/RPS6/RPS6KB1/TFRC/XRCC1/SQSTM1/WWTR1/DIABLO/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50/COL6A1/TGM2/DIRAS3/GATA3/RBM15/TSC1/NF2/TTF1/XBP1
## GO:0009987 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB3/HSPA1A/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/PTK2/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/VHL/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EIF4E/EIF4G1/MTOR/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/AKT1S1/BID/ERCC1/CHEK2/MYH11/INPP4B/YWHAB/RAB11B/PRKCD/RAB25/PRRT2/MACC1/ACACA/E2F1/CASP9/PREX1/AXL/CDKN2A/CAV1/MSH2/CASP3/CCNE1/MAPK9/ANXA1/TFF1/YAP1/CDH1/ANXA7/ASNS/EEF2/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD3/SMAD4/PRDX1/SERPINE1/PIK3CA/MAPK3/RET/RPS6/RPS6KB1/TFRC/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/DIABLO/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50/SYP/COL6A1/CDH2/TGM2/DIRAS3/GATA3/RBM15/TSC1/NF2/TTF1/XBP1
## GO:0016032                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  NOTCH1/BCL2/HSPA1A/ADAR/EGFR/JUN/AKT1/CDK1/GSK3B/ITGA2/BECN1/AXL/CAV1/TFRC
## GO:0022414                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ESR1/ERRFI1/PTEN/NOTCH1/BCL2/KIT/RB1/MYH9/CDKN1B/EGFR/BCL2L11/PTGS2/FOXO3/AKT1/BCL2L1/ATM/PARP1/AR/CASP8/CDK1/CTNNB1/MTOR/IGF1R/ITGA2/RAD51/CCNE2/ERCC1/AXL/MSH2/CASP3/CCNE1/MSH6/IGFBP2/SMAD4/PIK3CA/RPS6KB1/RAD50/COL6A1/DIRAS3/GATA3
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    96    96/147
## GO:0044423 GO:0044423           virion component     0     0/147
## GO:0110165 GO:0110165 cellular anatomical entity   147   147/147
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 geneID
## GO:0032991                                                                                                                                                                                                                                                                                                      ESR1/BAP1/MET/NOTCH1/BCL2/KIT/NCOA3/ERBB3/HSPA1A/RB1/ADAR/MYH9/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/PTGS2/ETS1/SHC1/FOXO3/AKT1/BCL2L1/ATM/STAT5A/STAT3/PARP1/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EIF4E/EIF4G1/MTOR/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/PXN/RAD51/SRSF1/ARID1A/BECN1/PEA15/CCNE2/AKT1S1/ERCC1/MYH11/E2F1/CASP9/AXL/CDKN2A/CAV1/MSH2/CASP3/CCNE1/YAP1/CDH1/EEF2/FOXM1/FN1/GAPDH/MSH6/SMAD3/SMAD4/SERPINE1/PIK3CA/RET/RPS6/TFRC/XRCC1/RAB11A/WWTR1/DIABLO/RICTOR/TP53BP1/RAD50/COL6A1/CDH2/TGM2/GATA3/RBM15/TSC1/XBP1
## GO:0044423                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
## GO:0110165 ESR1/AKT2/BAP1/ERRFI1/MET/PTEN/NOTCH1/G6PD/BCL2/KIT/NCOA3/ERBB3/HSPA1A/KRAS/NRAS/RB1/ADAR/PDCD4/MYH9/PTK2/CCND1/CDKN1A/CDKN1B/IRS1/MYC/EGFR/JUN/PIK3R1/NOTCH3/BCL2L11/EZH2/PIK3R2/RAF1/PTGS2/ETS1/STMN1/SHC1/FOXO3/YWHAZ/AKT1/VHL/BCL2L1/ATM/STAT5A/STAT3/PARP1/XIAP/AR/CASP8/CDK1/CHEK1/CTNNB1/DVL3/EIF4E/EIF4G1/MTOR/GSK3B/IGF1R/ITGA2/MAPT/YBX1/PRKAA1/PRKCA/MAPK1/MAPK8/PXN/RAD51/SRSF1/YWHAE/ARID1A/BECN1/PEA15/CCNE2/TUBA1B/NDRG1/EEF2K/AKT1S1/BID/ERCC1/CHEK2/MYH11/INPP4B/YWHAB/RAB11B/PRKCD/RAB25/PRRT2/MACC1/ACACA/E2F1/CASP9/PREX1/AXL/CDKN2A/CAV1/MSH2/CASP3/CCNE1/MAPK9/ANXA1/TFF1/YAP1/CDH1/ANXA7/ASNS/EEF2/EIF4EBP1/FOXM1/FN1/GAPDH/MSH6/IGFBP2/SMAD3/SMAD4/PRDX1/SERPINE1/PIK3CA/MAPK3/RET/RPS6/RPS6KB1/TFRC/XRCC1/RAB11A/SQSTM1/GAB2/WWTR1/ANLN/DIABLO/NEK7/RICTOR/TP53BP1/FASN/BRAF/LCN2/RAD50/SYP/COL6A1/CDH2/TGM2/DIRAS3/GATA3/RBM15/TSC1/NF2/TTF1/XBP1
barplot(ggo_MF[[1]], title = "groupGO, Molecular Function, \n RPPAArray, FDR = 0.9")

barplot(ggo_MF[[2]], title = "groupGO, Molecular Function, \n RNASeq2GeneNorm, FDR = 1-1e-14")

barplot(ggo_MF[[3]], title = "groupGO, Molecular Function, \n RNASeq2GeneNorm, FDR = 1-1e-6")

barplot(ggo_MF[[4]], title = "groupGO, Molecular Function, \n miRNASeqGene, FDR = 1-1e-13")

barplot(ggo_MF[[5]], title = "groupGO, Molecular Function, \n miRNASeqGene, FDR = 1-1e-6")

barplot(ggo_MF[[6]], title = "groupGO, Molecular Function, \n All datasets, FDR = 1-1e-14")

barplot(ggo_MF[[7]], title = "groupGO, Molecular Function, \n All datasets, FDR = 1-1e-6")

barplot(ggo_MF[[8]], title = "groupGO, Molecular Function, \n RPPAArray, Surviving Patients, FDR = 0.9")

barplot(ggo_MF[[9]], title = "groupGO, Molecular Function, \n RPPAArray, Deceased Patients, FDR = 0.9")

barplot(ggo_MF[[10]], title = "groupGO, Molecular Function, \n RNASeq2GeneNorm, Surviving Patients, FDR = 1-1e-14")

barplot(ggo_MF[[11]], title = "groupGO, Molecular Function, \n RNASeq2GeneNorm, Deceased Patients, FDR = 1-1e-14")

barplot(ggo_MF[[12]], title = "groupGO, Molecular Function, \n RNASeq2GeneNorm, Surviving Patients, FDR = 1-1e-6")

barplot(ggo_MF[[13]], title = "groupGO, Molecular Function, \n RNASeq2GeneNorm, Deceased Patients, FDR = 1-1e-6")

barplot(ggo_MF[[14]], title = "groupGO, Molecular Function, \n miRNASeqGene, Surviving Patients, FDR = 1-1e-13")

barplot(ggo_MF[[15]], title = "groupGO, Molecular Function, \n miRNASeqGene, Deceased Patients, FDR = 1-1e-13")

barplot(ggo_MF[[16]], title = "groupGO, Molecular Function, \n miRNASeqGene, Surviving Patients, FDR = 1-1e-6")

barplot(ggo_MF[[17]], title = "groupGO, Molecular Function, \n miRNASeqGene, Deceased Patients, FDR = 1-1e-6")

barplot(ggo_MF[[18]], title = "groupGO, Molecular Function, \n All datasets, Surviving Patients, FDR = 1-1e-14")

barplot(ggo_MF[[19]], title = "groupGO, Molecular Function, \n All datasets, Deceased Patients, FDR = 1-1e-14")

barplot(ggo_MF[[20]], title = "groupGO, Molecular Function, \n All datasets, Surviving Patients, FDR = 1-1e-6")

barplot(ggo_MF[[21]], title = "groupGO, Molecular Function, \n All datasets, Deceased Patients, FDR = 1-1e-6")

barplot(ggo_BP[[1]], title = "groupGO, Biological Process, \n RPPAArray, FDR = 0.9")

barplot(ggo_BP[[2]], title = "groupGO, Biological Process, \n RNASeq2GeneNorm, FDR = 1-1e-14")

barplot(ggo_BP[[3]], title = "groupGO, Biological Process, \n RNASeq2GeneNorm, FDR = 1-1e-6")

barplot(ggo_BP[[4]], title = "groupGO, Biological Process, \n miRNASeqGene, FDR = 1-1e-13")

barplot(ggo_BP[[5]], title = "groupGO, Biological Process, \n miRNASeqGene, FDR = 1-1e-6")

barplot(ggo_BP[[6]], title = "groupGO, Biological Process, \n All datasets, FDR = 1-1e-14")

barplot(ggo_BP[[7]], title = "groupGO, Biological Process, \n All datasets, FDR = 1-1e-6")

barplot(ggo_BP[[8]], title = "groupGO, Biological Process, \n RPPAArray, Surviving Patients, FDR = 0.9")

barplot(ggo_BP[[9]], title = "groupGO, Biological Process, \n RPPAArray, Deceased Patients, FDR = 0.9")

barplot(ggo_BP[[10]], title = "groupGO, Biological Process, \n RNASeq2GeneNorm, Surviving Patients, FDR = 1-1e-14")

barplot(ggo_BP[[11]], title = "groupGO, Biological Process, \n RNASeq2GeneNorm, Deceased Patients, FDR = 1-1e-14")

barplot(ggo_BP[[12]], title = "groupGO, Biological Process, \n RNASeq2GeneNorm, Surviving Patients, FDR = 1-1e-6")

barplot(ggo_BP[[13]], title = "groupGO, Biological Process, \n RNASeq2GeneNorm, Deceased Patients, FDR = 1-1e-6")

barplot(ggo_BP[[14]], title = "groupGO, Biological Process, \n miRNASeqGene, Surviving Patients, FDR = 1-1e-14")

barplot(ggo_BP[[15]], title = "groupGO, Biological Process, \n miRNASeqGene, Deceased Patients, FDR = 1-1e-14")

barplot(ggo_BP[[16]], title = "groupGO, Biological Process, \n miRNASeqGene, Surviving Patients, FDR = 1-1e-6")

barplot(ggo_BP[[17]], title = "groupGO, Biological Process, \n miRNASeqGene, Deceased Patients, FDR = 1-1e-6")

barplot(ggo_BP[[18]], title = "groupGO, Biological Process, \n All datasets, Surviving Patients, FDR = 1-1e-14")

barplot(ggo_BP[[19]], title = "groupGO, Biological Process, \n All datasets, Deceased Patients, FDR = 1-1e-14")

barplot(ggo_BP[[20]], title = "groupGO, Biological Process, \n All datasets, Surviving Patients, FDR = 1-1e-6")

barplot(ggo_BP[[21]], title = "groupGO, Biological Process, \n All datasets, Deceased Patients, FDR = 1-1e-6")

barplot(ggo_CC[[1]], title = "groupGO, Cellular Component, \n RPPAArray, FDR = 0.9")

barplot(ggo_CC[[2]], title = "groupGO, Cellular Component, \n RNASeq2GeneNorm, FDR = 1-1e-14")

barplot(ggo_CC[[3]], title = "groupGO, Cellular Component, \n RNASeq2GeneNorm, FDR = 1-1e-6")

barplot(ggo_CC[[4]], title = "groupGO, Cellular Component, \n miRNASeqGene, FDR = 1-1e-13")

barplot(ggo_CC[[5]], title = "groupGO, Cellular Component, \n miRNASeqGene, FDR = 1-1e-6")

barplot(ggo_CC[[6]], title = "groupGO, Cellular Component, \n All datasets, FDR = 1-1e-14")

barplot(ggo_CC[[7]], title = "groupGO, Cellular Component, \n All datasets, FDR = 1-1e-6")

barplot(ggo_CC[[8]], title = "groupGO, Cellular Component, \n RPPAArray, Surviving Patients, FDR = 0.9")

barplot(ggo_CC[[9]], title = "groupGO, Cellular Component, \n RPPAArray, Deceased Patients, FDR = 0.9")

barplot(ggo_CC[[10]], title = "groupGO, Cellular Component, \n RNASeq2GeneNorm, Surviving Patients, FDR = 1-1e-14")

barplot(ggo_CC[[11]], title = "groupGO, Cellular Component, \n RNASeq2GeneNorm, Deceased Patients, FDR = 1-1e-14")

barplot(ggo_CC[[12]], title = "groupGO, Cellular Component, \n RNASeq2GeneNorm, Surviving Patients, FDR = 1-1e-6")

barplot(ggo_CC[[13]], title = "groupGO, Cellular Component, \n RNASeq2GeneNorm, Deceased Patients, FDR = 1-1e-6")

barplot(ggo_CC[[14]], title = "groupGO, Cellular Component, \n miRNASeqGene, Surviving Patients, FDR = 1-1e-13")

barplot(ggo_CC[[15]], title = "groupGO, Cellular Component, \n miRNASeqGene, Deceased Patients, FDR = 1-1e-13")

barplot(ggo_CC[[16]], title = "groupGO, Cellular Component, \n miRNASeqGene, Surviving Patients, FDR = 1-1e-6")

barplot(ggo_CC[[17]], title = "groupGO, Cellular Component, \n miRNASeqGene, Deceased Patients, FDR = 1-1e-6")

barplot(ggo_CC[[18]], title = "groupGO, Cellular Component, \n All datasets, Surviving Patients, FDR = 1-1e-14")

barplot(ggo_CC[[19]], title = "groupGO, Cellular Component, \n All datasets, Deceased Patients, FDR = 1-1e-14")

barplot(ggo_CC[[20]], title = "groupGO, Cellular Component, \n All datasets, Surviving Patients, FDR = 1-1e-6")

barplot(ggo_CC[[21]], title = "groupGO, Cellular Component, \n All datasets, Deceased Patients, FDR = 1-1e-6")

B. GO Over-Representation

ego_MF <- list()#GO enrichment of a geneset for Molecular Function
ego_BP <- list()#GO enrichment of a geneset for Biological Process
ego_CC <- list()#GO enrichment of a geneset for Cellular Component


for(z in 1:length(geneNames)){
  print(z)
  input <- geneNames[[z]]
  ego_MF[[z]] <- enrichGO(
    gene          = input,
    OrgDb         = org.Hs.eg.db,
    ont           = "MF",
    pAdjustMethod = "BH",
    keyType="SYMBOL",
    pvalueCutoff  = 0.05,
    qvalueCutoff  = 0.05,
    minGSSize     = 2,
    readable      = TRUE)
  
  ego_BP[[z]] <- enrichGO(
    gene          = input,
    OrgDb         = org.Hs.eg.db,
    ont           = "BP",
    pAdjustMethod = "BH",
    keyType="SYMBOL",
    pvalueCutoff  = 0.05,
    qvalueCutoff  = 0.05,
    minGSSize     = 2,
    readable      = TRUE)
  
  ego_CC[[z]] <- enrichGO(
    gene          = input,
    OrgDb         = org.Hs.eg.db,
    ont           = "CC",
    pAdjustMethod = "BH",
    keyType="SYMBOL",
    pvalueCutoff  = 0.05,
    qvalueCutoff  = 0.05,
    minGSSize     = 2,
    readable      = TRUE)
}
## [1] 1
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 7
## [1] 8
## [1] 9
## [1] 10
## [1] 11
## [1] 12
## [1] 13
## [1] 14
## [1] 15
## [1] 16
## [1] 17
## [1] 18
## [1] 19
## [1] 20
## [1] 21
for(z in 1:length(geneNames)){
  print(head(ego_MF[[z]]))
  print(head(ego_BP[[z]]))
  print(head(ego_CC[[z]]))
}
##                    ID                               Description GeneRatio
## GO:0032143 GO:0032143          single thymine insertion binding      2/14
## GO:0032137 GO:0032137           guanine/thymine mispair binding      2/14
## GO:0032142 GO:0032142          single guanine insertion binding      2/14
## GO:0032138 GO:0032138 single base insertion or deletion binding      2/14
## GO:0032135 GO:0032135         DNA insertion or deletion binding      2/14
## GO:0032405 GO:0032405                 MutLalpha complex binding      2/14
##            BgRatio       pvalue     p.adjust       qvalue    geneID Count
## GO:0032143 2/18522 5.305412e-07 8.060742e-05 3.014405e-05 MSH6/MSH2     2
## GO:0032137 3/18522 1.590936e-06 8.060742e-05 3.014405e-05 MSH6/MSH2     2
## GO:0032142 3/18522 1.590936e-06 8.060742e-05 3.014405e-05 MSH6/MSH2     2
## GO:0032138 4/18522 3.180497e-06 1.208589e-04 4.519654e-05 MSH6/MSH2     2
## GO:0032135 6/18522 7.944376e-06 2.012575e-04 7.526251e-05 MSH6/MSH2     2
## GO:0032405 6/18522 7.944376e-06 2.012575e-04 7.526251e-05 MSH6/MSH2     2
##                    ID
## GO:0051053 GO:0051053
## GO:0002562 GO:0002562
## GO:0016444 GO:0016444
## GO:0002520 GO:0002520
## GO:0002200 GO:0002200
## GO:0010165 GO:0010165
##                                                                                             Description
## GO:0051053                                                 negative regulation of DNA metabolic process
## GO:0002562 somatic diversification of immune receptors via germline recombination within a single locus
## GO:0016444                                                               somatic cell DNA recombination
## GO:0002520                                                                    immune system development
## GO:0002200                                                  somatic diversification of immune receptors
## GO:0010165                                                                            response to X-ray
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0051053      5/14 142/18888 4.242310e-08 5.387733e-05 2.228329e-05
## GO:0002562      4/14  70/18888 1.683461e-07 5.968005e-05 2.468325e-05
## GO:0016444      4/14  70/18888 1.683461e-07 5.968005e-05 2.468325e-05
## GO:0002520      5/14 197/18888 2.175939e-07 5.968005e-05 2.468325e-05
## GO:0002200      4/14  76/18888 2.349608e-07 5.968005e-05 2.468325e-05
## GO:0010165      3/14  28/18888 1.050419e-06 2.223388e-04 9.195776e-05
##                              geneID Count
## GO:0051053 GATA3/ATM/TTF1/MSH6/MSH2     5
## GO:0002562       TFRC/ATM/MSH6/MSH2     4
## GO:0016444       TFRC/ATM/MSH6/MSH2     4
## GO:0002520 TFRC/GATA3/ATM/MSH6/MSH2     5
## GO:0002200       TFRC/ATM/MSH6/MSH2     4
## GO:0010165           GATA3/ATM/MSH2     3
##                    ID             Description GeneRatio   BgRatio       pvalue
## GO:0032301 GO:0032301       MutSalpha complex      2/14   2/19894 4.598847e-07
## GO:0032300 GO:0032300 mismatch repair complex      2/14  11/19894 2.520226e-05
## GO:0042470 GO:0042470              melanosome      3/14 112/19894 6.043424e-05
## GO:0048770 GO:0048770         pigment granule      3/14 112/19894 6.043424e-05
## GO:0032302 GO:0032302        MutSbeta complex      1/14   2/19894 1.407000e-03
## GO:0097452 GO:0097452            GAIT complex      1/14   4/19894 2.812161e-03
##                p.adjust       qvalue          geneID Count
## GO:0032301 2.759308e-05 1.694312e-05       MSH6/MSH2     2
## GO:0032300 7.560678e-04 4.642522e-04       MSH6/MSH2     2
## GO:0042470 9.065136e-04 5.566311e-04 FASN/MYH11/TFRC     3
## GO:0048770 9.065136e-04 5.566311e-04 FASN/MYH11/TFRC     3
## GO:0032302 1.688400e-02 1.036737e-02            MSH2     1
## GO:0097452 2.812161e-02 1.726765e-02           GAPDH     1
##                    ID                               Description GeneRatio
## GO:0045296 GO:0045296                          cadherin binding     13/46
## GO:0044389 GO:0044389     ubiquitin-like protein ligase binding     10/46
## GO:0031625 GO:0031625          ubiquitin protein ligase binding      9/46
## GO:0045309 GO:0045309 protein phosphorylated amino acid binding      5/46
## GO:0140311 GO:0140311             protein sequestering activity      4/46
## GO:0019903 GO:0019903               protein phosphatase binding      6/46
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0045296 333/18522 9.692270e-13 2.694451e-10 1.316108e-10
## GO:0044389 324/18522 5.449804e-09 7.575228e-07 3.700130e-07
## GO:0031625 305/18522 5.107424e-08 4.732879e-06 2.311781e-06
## GO:0045309  59/18522 3.421023e-07 2.377611e-05 1.161347e-05
## GO:0140311  29/18522 7.555303e-07 4.200748e-05 2.051861e-05
## GO:0019903 142/18522 1.329046e-06 6.157914e-05 3.007841e-05
##                                                                                geneID
## GO:0045296 EEF2/HSPA1A/CTNNB1/CDH2/FASN/CTNNA1/NDRG1/ANXA1/YWHAZ/YWHAB/MYH9/YWHAE/KDR
## GO:0044389           SQSTM1/HSPA1A/CTNNB1/TUBA1B/CDKN1A/ERBB3/YWHAZ/YWHAE/PARP1/CCNB1
## GO:0031625                 SQSTM1/HSPA1A/CTNNB1/TUBA1B/CDKN1A/ERBB3/YWHAZ/YWHAE/PARP1
## GO:0045309                                            PIK3R1/YWHAZ/YWHAB/PIK3R2/YWHAE
## GO:0140311                                                  SQSTM1/CDKN1A/YWHAZ/YWHAE
## GO:0019903                                        CTNNB1/CDH2/PIK3R1/PXN/PIK3R2/YWHAE
##            Count
## GO:0045296    13
## GO:0044389    10
## GO:0031625     9
## GO:0045309     5
## GO:0140311     4
## GO:0019903     6
##                    ID                                         Description
## GO:0034504 GO:0034504                     protein localization to nucleus
## GO:0031400 GO:0031400 negative regulation of protein modification process
## GO:0051402 GO:0051402                            neuron apoptotic process
## GO:1900180 GO:1900180       regulation of protein localization to nucleus
## GO:0030099 GO:0030099                        myeloid cell differentiation
## GO:0097305 GO:0097305                                 response to alcohol
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0034504     10/46 311/18888 3.059074e-09 5.478249e-06 2.714232e-06
## GO:0031400     11/46 426/18888 4.430448e-09 5.478249e-06 2.714232e-06
## GO:0051402      9/46 292/18888 2.976501e-08 2.453629e-05 1.215666e-05
## GO:1900180      7/46 144/18888 5.397589e-08 3.337059e-05 1.653367e-05
## GO:0030099     10/46 439/18888 8.010214e-08 3.961852e-05 1.962924e-05
## GO:0097305      8/46 259/18888 1.865836e-07 7.138999e-05 3.537061e-05
##                                                                           geneID
## GO:0034504        SQSTM1/PIK3R1/CDKN1A/CTNNA1/TFRC/YWHAZ/PIK3R2/YWHAE/PARP1/CDK1
## GO:0031400 SQSTM1/HSPA1A/CTNNB1/G6PD/CDKN1A/PDCD4/ADAR/YWHAB/ERRFI1/EIF4G1/YWHAE
## GO:0051402                 GAPDH/CTNNB1/CCND1/COL6A1/G6PD/ERBB3/PARP1/KDR/BCL2L1
## GO:1900180                            PIK3R1/CTNNA1/TFRC/YWHAZ/PIK3R2/PARP1/CDK1
## GO:0030099             HSPA1A/CTNNB1/FASN/PRKCA/PIK3R1/G6PD/ADAR/TFRC/MYH9/PARP1
## GO:0097305                    CTNNB1/G6PD/CDKN1A/CTNNA1/EIF4G1/PARP1/CDK1/BCL2L1
##            Count
## GO:0034504    10
## GO:0031400    11
## GO:0051402     9
## GO:1900180     7
## GO:0030099    10
## GO:0097305     8
##                    ID             Description GeneRatio   BgRatio       pvalue
## GO:0005925 GO:0005925          focal adhesion     13/46 421/19894 7.670385e-12
## GO:0030055 GO:0030055 cell-substrate junction     13/46 431/19894 1.029085e-11
## GO:0005912 GO:0005912       adherens junction      6/46 188/19894 4.498552e-06
## GO:0097125 GO:0097125  cyclin B1-CDK1 complex      2/46   2/19894 5.230557e-06
## GO:0042470 GO:0042470              melanosome      5/46 112/19894 5.894996e-06
## GO:0048770 GO:0048770         pigment granule      5/46 112/19894 5.894996e-06
##                p.adjust       qvalue
## GO:0005925 1.281211e-09 6.120349e-10
## GO:0030055 1.281211e-09 6.120349e-10
## GO:0005912 2.446423e-04 1.168657e-04
## GO:0097125 2.446423e-04 1.168657e-04
## GO:0042470 2.446423e-04 1.168657e-04
## GO:0048770 2.446423e-04 1.168657e-04
##                                                                                  geneID
## GO:0005925 HSPA1A/CTNNB1/TGM2/CDH2/CTNNA1/ANXA1/YWHAZ/YWHAB/PXN/PIK3R2/ITGA2/MYH9/YWHAE
## GO:0030055 HSPA1A/CTNNB1/TGM2/CDH2/CTNNA1/ANXA1/YWHAZ/YWHAB/PXN/PIK3R2/ITGA2/MYH9/YWHAE
## GO:0005912                                          CTNNB1/CDH2/CTNNA1/NDRG1/ANXA1/MYH9
## GO:0097125                                                                   CDK1/CCNB1
## GO:0042470                                                  FASN/TFRC/YWHAZ/YWHAB/YWHAE
## GO:0048770                                                  FASN/TFRC/YWHAZ/YWHAB/YWHAE
##            Count
## GO:0005925    13
## GO:0030055    13
## GO:0005912     6
## GO:0097125     2
## GO:0042470     5
## GO:0048770     5
##                    ID                               Description GeneRatio
## GO:0045296 GO:0045296                          cadherin binding     16/55
## GO:0044389 GO:0044389     ubiquitin-like protein ligase binding     11/55
## GO:0031625 GO:0031625          ubiquitin protein ligase binding     10/55
## GO:0045309 GO:0045309 protein phosphorylated amino acid binding      6/55
## GO:0051219 GO:0051219                    phosphoprotein binding      6/55
## GO:0019207 GO:0019207                 kinase regulator activity      8/55
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0045296 333/18522 1.312656e-15 4.161119e-13 1.948258e-13
## GO:0044389 324/18522 2.387925e-09 3.784861e-07 1.772092e-07
## GO:0031625 305/18522 1.922313e-08 1.637936e-06 7.668901e-07
## GO:0045309  59/18522 2.066796e-08 1.637936e-06 7.668901e-07
## GO:0051219  93/18522 3.236654e-07 2.052039e-05 9.607752e-06
## GO:0019207 270/18522 1.237087e-06 6.535943e-05 3.060162e-05
##                                                                                                 geneID
## GO:0045296 HSPA1A/EEF2/CTNNB1/CDH2/FASN/ANXA1/NDRG1/CTNNA1/YWHAZ/MYH9/YWHAE/YWHAB/PRDX1/ANLN/PARK7/KDR
## GO:0044389                        SQSTM1/HSPA1A/CTNNB1/ERBB3/CDKN1A/TUBA1B/YWHAZ/YWHAE/CCNB1/JUN/PARP1
## GO:0031625                              SQSTM1/HSPA1A/CTNNB1/ERBB3/CDKN1A/TUBA1B/YWHAZ/YWHAE/JUN/PARP1
## GO:0045309                                                        PIK3R1/PIK3R2/YWHAZ/YWHAE/YWHAB/SHC1
## GO:0051219                                                        PIK3R1/PIK3R2/YWHAZ/YWHAE/YWHAB/SHC1
## GO:0019207                                           ERBB3/PIK3R1/CDKN1A/CCND1/PIK3R2/CCNB1/YWHAB/AKT1
##            Count
## GO:0045296    16
## GO:0044389    11
## GO:0031625    10
## GO:0045309     6
## GO:0051219     6
## GO:0019207     8
##                    ID                                            Description
## GO:0034504 GO:0034504                        protein localization to nucleus
## GO:0031400 GO:0031400    negative regulation of protein modification process
## GO:1900180 GO:1900180          regulation of protein localization to nucleus
## GO:0051402 GO:0051402                               neuron apoptotic process
## GO:0014037 GO:0014037                           Schwann cell differentiation
## GO:1900182 GO:1900182 positive regulation of protein localization to nucleus
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0034504     12/55 311/18888 7.489550e-11 2.162982e-07 1.083225e-07
## GO:0031400     13/55 426/18888 2.000619e-10 2.888894e-07 1.446764e-07
## GO:1900180      9/55 144/18888 3.191962e-10 3.072795e-07 1.538862e-07
## GO:0051402     11/55 292/18888 6.535819e-10 4.718861e-07 2.363214e-07
## GO:0014037      6/55  49/18888 5.845827e-09 3.376550e-06 1.690982e-06
## GO:1900182      7/55  94/18888 1.006690e-08 4.845532e-06 2.426652e-06
##                                                                                      geneID
## GO:0034504        SQSTM1/PIK3R1/CDKN1A/CTNNA1/TFRC/PIK3R2/YWHAZ/YWHAE/AKT1/CDK1/PARK7/PARP1
## GO:0031400 SQSTM1/HSPA1A/CTNNB1/G6PD/CDKN1A/ADAR/PDCD4/ERRFI1/EIF4G1/YWHAE/YWHAB/AKT1/PARK7
## GO:1900180                            PIK3R1/CTNNA1/TFRC/PIK3R2/YWHAZ/AKT1/CDK1/PARK7/PARP1
## GO:0051402                 GAPDH/CTNNB1/COL6A1/ERBB3/G6PD/CCND1/AKT2/PARK7/BCL2L1/KDR/PARP1
## GO:0014037                                                COL6A1/ERBB3/NDRG1/AKT2/AKT1/CDK1
## GO:1900182                                         PIK3R1/TFRC/PIK3R2/AKT1/CDK1/PARK7/PARP1
##            Count
## GO:0034504    12
## GO:0031400    13
## GO:1900180     9
## GO:0051402    11
## GO:0014037     6
## GO:1900182     7
##                    ID             Description GeneRatio   BgRatio       pvalue
## GO:0005925 GO:0005925          focal adhesion     14/55 421/19894 5.761579e-12
## GO:0030055 GO:0030055 cell-substrate junction     14/55 431/19894 7.888574e-12
## GO:0042470 GO:0042470              melanosome      6/55 112/19894 6.443021e-07
## GO:0048770 GO:0048770         pigment granule      6/55 112/19894 6.443021e-07
## GO:0005912 GO:0005912       adherens junction      7/55 188/19894 8.325869e-07
## GO:0097125 GO:0097125  cyclin B1-CDK1 complex      2/55   2/19894 7.504712e-06
##                p.adjust       qvalue
## GO:0005925 9.979046e-10 5.106813e-10
## GO:0030055 9.979046e-10 5.106813e-10
## GO:0042470 4.075210e-05 2.085504e-05
## GO:0048770 4.075210e-05 2.085504e-05
## GO:0005912 4.212890e-05 2.155962e-05
## GO:0097125 3.164487e-04 1.619438e-04
##                                                                                       geneID
## GO:0005925 HSPA1A/TGM2/CTNNB1/CDH2/ANXA1/CTNNA1/ITGA2/PIK3R2/PXN/YWHAZ/MYH9/YWHAE/YWHAB/SHC1
## GO:0030055 HSPA1A/TGM2/CTNNB1/CDH2/ANXA1/CTNNA1/ITGA2/PIK3R2/PXN/YWHAZ/MYH9/YWHAE/YWHAB/SHC1
## GO:0042470                                                 FASN/TFRC/YWHAZ/YWHAE/YWHAB/PRDX1
## GO:0048770                                                 FASN/TFRC/YWHAZ/YWHAE/YWHAB/PRDX1
## GO:0005912                                         CTNNB1/CDH2/ANXA1/NDRG1/CTNNA1/MYH9/PARK7
## GO:0097125                                                                        CCNB1/CDK1
##            Count
## GO:0005925    14
## GO:0030055    14
## GO:0042470     6
## GO:0048770     6
## GO:0005912     7
## GO:0097125     2
##                    ID                              Description GeneRatio
## GO:0031625 GO:0031625         ubiquitin protein ligase binding    18/113
## GO:0044389 GO:0044389    ubiquitin-like protein ligase binding    18/113
## GO:0019903 GO:0019903              protein phosphatase binding    13/113
## GO:0019902 GO:0019902                      phosphatase binding    14/113
## GO:0140297 GO:0140297 DNA-binding transcription factor binding    18/113
## GO:0106310 GO:0106310           protein serine kinase activity    16/113
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0031625 305/18522 3.959025e-13 2.066611e-10 1.033514e-10
## GO:0044389 324/18522 1.103059e-12 2.878985e-10 1.439783e-10
## GO:0019903 142/18522 3.612479e-12 6.285714e-10 3.143491e-10
## GO:0019902 189/18522 9.279673e-12 1.210997e-09 6.056207e-10
## GO:0140297 478/18522 6.606275e-10 5.853864e-08 2.927522e-08
## GO:0106310 363/18522 6.728579e-10 5.853864e-08 2.927522e-08
##                                                                                                               geneID
## GO:0031625 BCL2/ERBB3/RB1/CDKN1A/CDKN1B/EGFR/JUN/YWHAZ/PARP1/CASP8/GSK3B/YWHAE/TUBA1B/BID/CHEK2/HSPA1A/CTNNB1/SQSTM1
## GO:0044389 BCL2/ERBB3/RB1/CDKN1A/CDKN1B/EGFR/JUN/YWHAZ/PARP1/CASP8/GSK3B/YWHAE/TUBA1B/BID/CHEK2/HSPA1A/CTNNB1/SQSTM1
## GO:0019903                                MET/BCL2/PTK2/CDKN1B/EGFR/PIK3R1/STAT3/MAPT/MAPK8/PXN/YWHAE/CTNNB1/RPS6KB1
## GO:0019902                          MET/BCL2/PTK2/CDKN1B/EGFR/PIK3R1/STAT3/MAPT/MAPK8/PXN/YWHAE/CTNNB1/MAPK1/RPS6KB1
## GO:0140297     ESR1/BCL2/NCOA3/RB1/MYC/JUN/ETS1/YWHAZ/STAT5A/STAT3/PARP1/GSK3B/ARID1A/E2F1/YAP1/CTNNB1/EIF4E/TP53BP1
## GO:0106310              AKT2/RAF1/AKT1/ATM/CHEK1/GSK3B/PRKAA1/MAPK8/CHEK2/PRKCD/PIK3CA/PRKCA/MAPK1/RPS6KB1/NEK7/BRAF
##            Count
## GO:0031625    18
## GO:0044389    18
## GO:0019903    13
## GO:0019902    14
## GO:0140297    18
## GO:0106310    16
##                    ID                           Description GeneRatio   BgRatio
## GO:0051402 GO:0051402              neuron apoptotic process    24/113 292/18888
## GO:0000082 GO:0000082 G1/S transition of mitotic cell cycle    21/113 234/18888
## GO:0043434 GO:0043434           response to peptide hormone    26/113 438/18888
## GO:0044772 GO:0044772   mitotic cell cycle phase transition    26/113 451/18888
## GO:0018105 GO:0018105       peptidyl-serine phosphorylation    22/113 282/18888
## GO:0018209 GO:0018209          peptidyl-serine modification    22/113 294/18888
##                  pvalue     p.adjust       qvalue
## GO:0051402 8.546400e-21 3.519408e-17 1.635511e-17
## GO:0000082 4.664170e-19 8.492181e-16 3.946419e-16
## GO:0043434 6.186630e-19 8.492181e-16 3.946419e-16
## GO:0044772 1.275758e-18 1.064236e-15 4.945632e-16
## GO:0018105 1.292175e-18 1.064236e-15 4.945632e-16
## GO:0018209 3.165189e-18 2.172375e-15 1.009529e-15
##                                                                                                                                                            geneID
## GO:0051402                 AKT2/G6PD/BCL2/ERBB3/KRAS/RB1/CCND1/BCL2L11/FOXO3/BCL2L1/ATM/PARP1/XIAP/CASP8/GSK3B/BID/AXL/MSH2/CASP3/CTNNB1/GAPDH/PIK3CA/DIABLO/BRAF
## GO:0000082                               PTEN/BCL2/RB1/CCND1/CDKN1A/CDKN1B/MYC/EGFR/EZH2/AKT1/ATM/ARID1A/CCNE2/BID/CHEK2/E2F1/CCNE1/EIF4E/EIF4EBP1/EIF4G1/RPS6KB1
## GO:0043434 ERRFI1/AKT2/RB1/PTK2/CDKN1B/IRS1/PIK3R1/RAF1/PTGS2/SHC1/AKT1/STAT5A/STAT3/PARP1/GSK3B/IGF1R/PRKAA1/PXN/PRKCD/CAV1/TFF1/PIK3CA/PRKCA/MAPK1/RPS6KB1/BRAF
## GO:0044772 PTEN/BCL2/RB1/CCND1/CDKN1A/CDKN1B/MYC/EGFR/EZH2/AKT1/ATM/CHEK1/ARID1A/CCNE2/BID/CHEK2/E2F1/CCNE1/EIF4E/EIF4EBP1/EIF4G1/FOXM1/RPS6KB1/RAB11A/ANLN/RAD50
## GO:0018105                             AKT2/PTEN/BCL2/EGFR/RAF1/PTGS2/AKT1/ATM/GSK3B/PRKAA1/MAPK8/PRKCD/CAV1/EIF4G1/PRKCA/MAPK1/RET/RPS6KB1/TFRC/NEK7/RICTOR/BRAF
## GO:0018209                             AKT2/PTEN/BCL2/EGFR/RAF1/PTGS2/AKT1/ATM/GSK3B/PRKAA1/MAPK8/PRKCD/CAV1/EIF4G1/PRKCA/MAPK1/RET/RPS6KB1/TFRC/NEK7/RICTOR/BRAF
##            Count
## GO:0051402    24
## GO:0000082    21
## GO:0043434    26
## GO:0044772    26
## GO:0018105    22
## GO:0018209    22
##                    ID                  Description GeneRatio   BgRatio
## GO:0005925 GO:0005925               focal adhesion    14/113 421/19894
## GO:0030055 GO:0030055      cell-substrate junction    14/113 431/19894
## GO:0000781 GO:0000781 chromosome, telomeric region     9/113 173/19894
## GO:0031968 GO:0031968     organelle outer membrane    10/113 248/19894
## GO:0019867 GO:0019867               outer membrane    10/113 250/19894
## GO:1902911 GO:1902911       protein kinase complex     8/113 150/19894
##                  pvalue     p.adjust       qvalue
## GO:0005925 1.189829e-07 2.662704e-05 1.593285e-05
## GO:0030055 1.584943e-07 2.662704e-05 1.593285e-05
## GO:0000781 6.351282e-07 7.113435e-05 4.256473e-05
## GO:0031968 1.525224e-06 1.101871e-04 6.593274e-05
## GO:0019867 1.639688e-06 1.101871e-04 6.593274e-05
## GO:1902911 2.271714e-06 1.272160e-04 7.612235e-05
##                                                                                   geneID
## GO:0005925 KRAS/MYH9/PTK2/EGFR/SHC1/YWHAZ/ITGA2/PXN/YWHAE/HSPA1A/CAV1/ANXA1/CTNNB1/MAPK1
## GO:0030055 KRAS/MYH9/PTK2/EGFR/SHC1/YWHAZ/ITGA2/PXN/YWHAE/HSPA1A/CAV1/ANXA1/CTNNB1/MAPK1
## GO:0000781                           EZH2/ATM/PARP1/CHEK1/CHEK2/MSH2/ERCC1/TP53BP1/RAD50
## GO:0031968                   BCL2/KRAS/BCL2L11/RAF1/PTGS2/FOXO3/BCL2L1/CASP8/BID/RPS6KB1
## GO:0019867                   BCL2/KRAS/BCL2L11/RAF1/PTGS2/FOXO3/BCL2L1/CASP8/BID/RPS6KB1
## GO:1902911                                RB1/CCND1/CDKN1A/IRS1/IGF1R/PRKAA1/CCNE2/CCNE1
##            Count
## GO:0005925    14
## GO:0030055    14
## GO:0000781     9
## GO:0031968    10
## GO:0019867    10
## GO:1902911     8
##                    ID                              Description GeneRatio
## GO:0031625 GO:0031625         ubiquitin protein ligase binding    19/125
## GO:0044389 GO:0044389    ubiquitin-like protein ligase binding    19/125
## GO:0019903 GO:0019903              protein phosphatase binding    14/125
## GO:0019902 GO:0019902                      phosphatase binding    15/125
## GO:0004674 GO:0004674 protein serine/threonine kinase activity    20/125
## GO:0019207 GO:0019207                kinase regulator activity    16/125
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0031625 305/18522 2.089422e-13 1.132467e-10 5.674431e-11
## GO:0044389 324/18522 6.138015e-13 1.353420e-10 6.781558e-11
## GO:0019903 142/18522 7.491256e-13 1.353420e-10 6.781558e-11
## GO:0019902 189/18522 2.633034e-12 3.567761e-10 1.787692e-10
## GO:0004674 427/18522 8.957830e-12 9.710287e-10 4.865516e-10
## GO:0019207 270/18522 4.016445e-11 3.296640e-09 1.651841e-09
##                                                                                                                       geneID
## GO:0031625   BCL2/ERBB3/HSPA1A/RB1/CDKN1A/CDKN1B/EGFR/JUN/YWHAZ/PARP1/CASP8/CTNNB1/GSK3B/YWHAE/BECN1/TUBA1B/BID/CHEK2/SQSTM1
## GO:0044389   BCL2/ERBB3/HSPA1A/RB1/CDKN1A/CDKN1B/EGFR/JUN/YWHAZ/PARP1/CASP8/CTNNB1/GSK3B/YWHAE/BECN1/TUBA1B/BID/CHEK2/SQSTM1
## GO:0019903                                 MET/BCL2/PTK2/CDKN1B/EGFR/PIK3R1/PIK3R2/STAT3/CTNNB1/MAPT/MAPK8/PXN/YWHAE/RPS6KB1
## GO:0019902                           MET/BCL2/PTK2/CDKN1B/EGFR/PIK3R1/PIK3R2/STAT3/CTNNB1/MAPT/MAPK1/MAPK8/PXN/YWHAE/RPS6KB1
## GO:0004674 AKT2/EGFR/RAF1/AKT1/ATM/CDK1/CHEK1/MTOR/GSK3B/PRKAA1/PRKCA/MAPK1/MAPK8/EEF2K/CHEK2/PRKCD/PIK3CA/RPS6KB1/NEK7/BRAF
## GO:0019207               ERBB3/CCND1/CDKN1A/CDKN1B/EGFR/PIK3R1/PIK3R2/AKT1/CCNE2/AKT1S1/YWHAB/CAV1/CASP3/CCNE1/PIK3CA/RICTOR
##            Count
## GO:0031625    19
## GO:0044389    19
## GO:0019903    14
## GO:0019902    15
## GO:0004674    20
## GO:0019207    16
##                    ID                           Description GeneRatio   BgRatio
## GO:0043434 GO:0043434           response to peptide hormone    29/125 438/18888
## GO:0051402 GO:0051402              neuron apoptotic process    25/125 292/18888
## GO:0062197 GO:0062197  cellular response to chemical stress    25/125 311/18888
## GO:0018105 GO:0018105       peptidyl-serine phosphorylation    24/125 282/18888
## GO:0018209 GO:0018209          peptidyl-serine modification    24/125 294/18888
## GO:0000082 GO:0000082 G1/S transition of mitotic cell cycle    22/125 234/18888
##                  pvalue     p.adjust       qvalue
## GO:0043434 4.350188e-21 1.387215e-17 6.214429e-18
## GO:0051402 6.247309e-21 1.387215e-17 6.214429e-18
## GO:0062197 2.926095e-20 4.331596e-17 1.940463e-17
## GO:0018105 4.716848e-20 5.236881e-17 2.346011e-17
## GO:0018209 1.256626e-19 1.116135e-16 5.000048e-17
## GO:0000082 2.257241e-19 1.670735e-16 7.484537e-17
##                                                                                                                                                                              geneID
## GO:0043434 AKT2/ERRFI1/RB1/PTK2/CDKN1B/IRS1/PIK3R1/PIK3R2/RAF1/PTGS2/SHC1/AKT1/STAT5A/STAT3/PARP1/MTOR/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/PXN/EEF2K/PRKCD/CAV1/TFF1/PIK3CA/RPS6KB1/BRAF
## GO:0051402                            AKT2/G6PD/BCL2/ERBB3/KRAS/RB1/CCND1/BCL2L11/FOXO3/BCL2L1/ATM/PARP1/XIAP/CASP8/CTNNB1/GSK3B/AKT1S1/BID/AXL/MSH2/CASP3/GAPDH/PIK3CA/DIABLO/BRAF
## GO:0062197                                   MET/G6PD/HSPA1A/EGFR/JUN/EZH2/PTGS2/FOXO3/AKT1/ATM/PARP1/CDK1/MTOR/MAPT/PRKAA1/MAPK1/MAPK8/PXN/BECN1/PRKCD/AXL/CAV1/CASP3/PRDX1/PIK3CA
## GO:0018105                                     AKT2/PTEN/BCL2/EGFR/RAF1/PTGS2/AKT1/ATM/CDK1/MTOR/GSK3B/PRKAA1/PRKCA/MAPK1/MAPK8/PRKCD/CAV1/EIF4G1/RET/RPS6KB1/TFRC/NEK7/RICTOR/BRAF
## GO:0018209                                     AKT2/PTEN/BCL2/EGFR/RAF1/PTGS2/AKT1/ATM/CDK1/MTOR/GSK3B/PRKAA1/PRKCA/MAPK1/MAPK8/PRKCD/CAV1/EIF4G1/RET/RPS6KB1/TFRC/NEK7/RICTOR/BRAF
## GO:0000082                                            PTEN/BCL2/RB1/CCND1/CDKN1A/CDKN1B/MYC/EGFR/EZH2/AKT1/ATM/CDK1/ARID1A/CCNE2/BID/CHEK2/E2F1/CCNE1/EIF4E/EIF4EBP1/EIF4G1/RPS6KB1
##            Count
## GO:0043434    29
## GO:0051402    25
## GO:0062197    25
## GO:0018105    24
## GO:0018209    24
## GO:0000082    22
##                    ID
## GO:0005925 GO:0005925
## GO:0000781 GO:0000781
## GO:0030055 GO:0030055
## GO:0031968 GO:0031968
## GO:0019867 GO:0019867
## GO:0061695 GO:0061695
##                                                               Description
## GO:0005925                                                 focal adhesion
## GO:0000781                                   chromosome, telomeric region
## GO:0030055                                        cell-substrate junction
## GO:0031968                                       organelle outer membrane
## GO:0019867                                                 outer membrane
## GO:0061695 transferase complex, transferring phosphorus-containing groups
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0005925    16/125 421/19894 9.238717e-09 1.503633e-06 8.748084e-07
## GO:0000781    11/125 173/19894 1.230305e-08 1.503633e-06 8.748084e-07
## GO:0030055    16/125 431/19894 1.285157e-08 1.503633e-06 8.748084e-07
## GO:0031968    12/125 248/19894 5.479182e-08 4.200343e-06 2.443745e-06
## GO:0019867    12/125 250/19894 5.983395e-08 4.200343e-06 2.443745e-06
## GO:0061695    13/125 308/19894 7.400807e-08 4.329472e-06 2.518871e-06
##                                                                                                geneID
## GO:0005925 HSPA1A/KRAS/MYH9/PTK2/EGFR/PIK3R2/SHC1/YWHAZ/CTNNB1/ITGA2/MAPK1/PXN/YWHAE/YWHAB/CAV1/ANXA1
## GO:0000781                             EZH2/ATM/PARP1/CDK1/CHEK1/CHEK2/MSH2/XRCC1/ERCC1/TP53BP1/RAD50
## GO:0030055 HSPA1A/KRAS/MYH9/PTK2/EGFR/PIK3R2/SHC1/YWHAZ/CTNNB1/ITGA2/MAPK1/PXN/YWHAE/YWHAB/CAV1/ANXA1
## GO:0031968                     BCL2/KRAS/BCL2L11/RAF1/PTGS2/FOXO3/BCL2L1/CASP8/MTOR/BECN1/BID/RPS6KB1
## GO:0019867                     BCL2/KRAS/BCL2L11/RAF1/PTGS2/FOXO3/BCL2L1/CASP8/MTOR/BECN1/BID/RPS6KB1
## GO:0061695             RB1/CCND1/CDKN1A/IRS1/PIK3R1/PIK3R2/CDK1/IGF1R/PRKAA1/BECN1/CCNE2/CCNE1/PIK3CA
##            Count
## GO:0005925    16
## GO:0000781    11
## GO:0030055    16
## GO:0031968    12
## GO:0019867    12
## GO:0061695    13
##                    ID                              Description GeneRatio
## GO:0019903 GO:0019903              protein phosphatase binding    15/140
## GO:0019902 GO:0019902                      phosphatase binding    16/140
## GO:0031625 GO:0031625         ubiquitin protein ligase binding    19/140
## GO:0044389 GO:0044389    ubiquitin-like protein ligase binding    19/140
## GO:0140297 GO:0140297 DNA-binding transcription factor binding    22/140
## GO:0004674 GO:0004674 protein serine/threonine kinase activity    20/140
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0019903 142/18522 2.117064e-13 1.179204e-10 6.195196e-11
## GO:0019902 189/18522 1.032162e-12 2.874572e-10 1.510216e-10
## GO:0031625 305/18522 1.694282e-12 3.145717e-10 1.652668e-10
## GO:0044389 324/18522 4.904125e-12 6.828994e-10 3.587755e-10
## GO:0140297 478/18522 1.084954e-11 1.208638e-09 6.349834e-10
## GO:0004674 427/18522 7.537835e-11 6.997623e-09 3.676348e-09
##                                                                                                                              geneID
## GO:0019903                                   MET/BCL2/CDKN1B/EGFR/PIK3R1/PIK3R2/STAT3/CTNNB1/MAPT/MAPK8/PXN/YWHAE/PTK2/RPS6KB1/CDH2
## GO:0019902                             MET/BCL2/CDKN1B/EGFR/PIK3R1/PIK3R2/STAT3/CTNNB1/MAPT/MAPK1/MAPK8/PXN/YWHAE/PTK2/RPS6KB1/CDH2
## GO:0031625          BCL2/ERBB3/RB1/CDKN1A/CDKN1B/EGFR/JUN/YWHAZ/PARP1/CASP8/CTNNB1/GSK3B/YWHAE/BECN1/TUBA1B/BID/CHEK2/HSPA1A/SQSTM1
## GO:0044389          BCL2/ERBB3/RB1/CDKN1A/CDKN1B/EGFR/JUN/YWHAZ/PARP1/CASP8/CTNNB1/GSK3B/YWHAE/BECN1/TUBA1B/BID/CHEK2/HSPA1A/SQSTM1
## GO:0140297 ESR1/BCL2/NCOA3/RB1/MYC/JUN/ETS1/YWHAZ/STAT5A/STAT3/PARP1/AR/CTNNB1/EIF4E/GSK3B/ARID1A/E2F1/YAP1/SMAD4/TP53BP1/GATA3/VHL
## GO:0004674      AKT2/EGFR/RAF1/AKT1/ATM/CDK1/CHEK1/GSK3B/PRKAA1/PRKCA/MAPK1/MAPK8/EEF2K/CHEK2/PRKCD/PIK3CA/RPS6KB1/NEK7/BRAF/ACVRL1
##            Count
## GO:0019903    15
## GO:0019902    16
## GO:0031625    19
## GO:0044389    19
## GO:0140297    22
## GO:0004674    20
##                    ID                                   Description GeneRatio
## GO:0051402 GO:0051402                      neuron apoptotic process    27/140
## GO:0043434 GO:0043434                   response to peptide hormone    30/140
## GO:0097191 GO:0097191         extrinsic apoptotic signaling pathway    22/140
## GO:0000082 GO:0000082         G1/S transition of mitotic cell cycle    22/140
## GO:0062197 GO:0062197          cellular response to chemical stress    24/140
## GO:0071375 GO:0071375 cellular response to peptide hormone stimulus    24/140
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0051402 292/18888 4.474068e-22 2.074178e-18 9.593344e-19
## GO:0043434 438/18888 1.045762e-20 2.424075e-17 1.121166e-17
## GO:0097191 230/18888 1.996199e-18 3.084794e-15 1.426757e-15
## GO:0000082 234/18888 2.899894e-18 3.360977e-15 1.554496e-15
## GO:0062197 311/18888 7.448689e-18 5.755354e-15 2.661926e-15
## GO:0071375 311/18888 7.448689e-18 5.755354e-15 2.661926e-15
##                                                                                                                                                                                     geneID
## GO:0051402                      AKT2/G6PD/BCL2/ERBB3/KRAS/RB1/CCND1/BCL2L11/FOXO3/BCL2L1/ATM/PARP1/XIAP/CASP8/CTNNB1/GSK3B/DIABLO/AKT1S1/BID/AXL/MSH2/CASP3/GAPDH/PIK3CA/BRAF/COL6A1/GATA3
## GO:0043434 AKT2/ERRFI1/RB1/CDKN1B/IRS1/PIK3R1/PIK3R2/RAF1/PTGS2/SHC1/AKT1/STAT5A/STAT3/PARP1/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/PXN/EEF2K/PRKCD/PTK2/CAV1/TFF1/PIK3CA/RPS6KB1/BRAF/COL6A1/TSC1
## GO:0097191                                             BCL2/ERBB3/PIK3R1/BCL2L11/RAF1/FOXO3/AKT1/BCL2L1/AR/CASP8/GSK3B/PEA15/DIABLO/BID/HSPA1A/CAV1/YAP1/SMAD4/SERPINE1/RET/RPS6KB1/CTNNA1
## GO:0000082                                                   PTEN/BCL2/RB1/CCND1/CDKN1A/CDKN1B/MYC/EGFR/EZH2/AKT1/ATM/CDK1/EIF4E/EIF4G1/ARID1A/CCNE2/BID/CHEK2/E2F1/CCNE1/EIF4EBP1/RPS6KB1
## GO:0062197                                               MET/G6PD/EGFR/JUN/EZH2/PTGS2/FOXO3/AKT1/ATM/PARP1/CDK1/MAPT/PRKAA1/MAPK1/MAPK8/PXN/BECN1/PRKCD/HSPA1A/AXL/CAV1/CASP3/PRDX1/PIK3CA
## GO:0071375                                    AKT2/RB1/IRS1/PIK3R1/PIK3R2/RAF1/SHC1/AKT1/STAT5A/STAT3/PARP1/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/PXN/EEF2K/PRKCD/PTK2/CAV1/PIK3CA/RPS6KB1/COL6A1
##            Count
## GO:0051402    27
## GO:0043434    30
## GO:0097191    22
## GO:0000082    22
## GO:0062197    24
## GO:0071375    24
##                    ID
## GO:0005925 GO:0005925
## GO:0030055 GO:0030055
## GO:0000781 GO:0000781
## GO:0061695 GO:0061695
## GO:1902911 GO:1902911
## GO:0044853 GO:0044853
##                                                               Description
## GO:0005925                                                 focal adhesion
## GO:0030055                                        cell-substrate junction
## GO:0000781                                   chromosome, telomeric region
## GO:0061695 transferase complex, transferring phosphorus-containing groups
## GO:1902911                                         protein kinase complex
## GO:0044853                                           plasma membrane raft
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0005925    19/140 421/19894 1.339410e-10 3.785075e-08 2.191359e-08
## GO:0030055    19/140 431/19894 1.992145e-10 3.785075e-08 2.191359e-08
## GO:0000781    12/140 173/19894 3.543075e-09 4.487895e-07 2.598255e-07
## GO:0061695    13/140 308/19894 2.819023e-07 2.678072e-05 1.550462e-05
## GO:1902911     9/140 150/19894 1.170938e-06 7.600626e-05 4.400362e-05
## GO:0044853     8/140 113/19894 1.352170e-06 7.600626e-05 4.400362e-05
##                                                                                                                 geneID
## GO:0005925 KRAS/MYH9/EGFR/PIK3R2/SHC1/YWHAZ/CTNNB1/ITGA2/MAPK1/PXN/YWHAE/YWHAB/HSPA1A/PTK2/CAV1/ANXA1/TGM2/CDH2/CTNNA1
## GO:0030055 KRAS/MYH9/EGFR/PIK3R2/SHC1/YWHAZ/CTNNB1/ITGA2/MAPK1/PXN/YWHAE/YWHAB/HSPA1A/PTK2/CAV1/ANXA1/TGM2/CDH2/CTNNA1
## GO:0000781                                        EZH2/ATM/PARP1/CDK1/CHEK1/RAD51/ERCC1/CHEK2/MSH2/XRCC1/TP53BP1/RAD50
## GO:0061695                              RB1/CCND1/CDKN1A/IRS1/PIK3R1/PIK3R2/CDK1/IGF1R/PRKAA1/BECN1/CCNE2/CCNE1/PIK3CA
## GO:1902911                                                         RB1/CCND1/CDKN1A/IRS1/CDK1/IGF1R/PRKAA1/CCNE2/CCNE1
## GO:0044853                                                              IRS1/PTGS2/CTNNB1/IGF1R/MAPK1/CAV1/CDH2/CTNNA1
##            Count
## GO:0005925    19
## GO:0030055    19
## GO:0000781    12
## GO:0061695    13
## GO:1902911     9
## GO:0044853     8
##                    ID                              Description GeneRatio
## GO:0031625 GO:0031625         ubiquitin protein ligase binding    20/144
## GO:0019903 GO:0019903              protein phosphatase binding    15/144
## GO:0044389 GO:0044389    ubiquitin-like protein ligase binding    20/144
## GO:0019902 GO:0019902                      phosphatase binding    16/144
## GO:0004674 GO:0004674 protein serine/threonine kinase activity    21/144
## GO:0140297 GO:0140297 DNA-binding transcription factor binding    22/144
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0031625 305/18522 2.778845e-13 9.174119e-11 4.777658e-11
## GO:0019903 142/18522 3.218989e-13 9.174119e-11 4.777658e-11
## GO:0044389 324/18522 8.549207e-13 1.624349e-10 8.459215e-11
## GO:0019902 189/18522 1.604252e-12 2.286059e-10 1.190524e-10
## GO:0004674 427/18522 1.681872e-11 1.832400e-09 9.542691e-10
## GO:0140297 478/18522 1.928842e-11 1.832400e-09 9.542691e-10
##                                                                                                                              geneID
## GO:0031625    BCL2/ERBB3/HSPA1A/RB1/CDKN1A/CDKN1B/EGFR/JUN/YWHAZ/PARP1/CASP8/CTNNB1/GSK3B/YWHAE/BECN1/TUBA1B/BID/CHEK2/SMAD1/SQSTM1
## GO:0019903                                   MET/BCL2/PTK2/CDKN1B/EGFR/PIK3R1/PIK3R2/STAT3/CTNNB1/MAPT/MAPK8/PXN/YWHAE/RPS6KB1/CDH2
## GO:0044389    BCL2/ERBB3/HSPA1A/RB1/CDKN1A/CDKN1B/EGFR/JUN/YWHAZ/PARP1/CASP8/CTNNB1/GSK3B/YWHAE/BECN1/TUBA1B/BID/CHEK2/SMAD1/SQSTM1
## GO:0019902                             MET/BCL2/PTK2/CDKN1B/EGFR/PIK3R1/PIK3R2/STAT3/CTNNB1/MAPT/MAPK1/MAPK8/PXN/YWHAE/RPS6KB1/CDH2
## GO:0004674 AKT2/EGFR/RAF1/AKT1/ATM/CDK1/CHEK1/MTOR/GSK3B/PRKAA1/PRKCA/MAPK1/MAPK8/EEF2K/CHEK2/PRKCD/PIK3CA/RPS6KB1/NEK7/BRAF/ACVRL1
## GO:0140297 ESR1/BCL2/NCOA3/RB1/MYC/JUN/ETS1/YWHAZ/VHL/STAT5A/STAT3/PARP1/AR/CTNNB1/EIF4E/GSK3B/ARID1A/E2F1/YAP1/SMAD4/TP53BP1/GATA3
##            Count
## GO:0031625    20
## GO:0019903    15
## GO:0044389    20
## GO:0019902    16
## GO:0004674    21
## GO:0140297    22
##                    ID                                   Description GeneRatio
## GO:0043434 GO:0043434                   response to peptide hormone    32/144
## GO:0051402 GO:0051402                      neuron apoptotic process    27/144
## GO:0071375 GO:0071375 cellular response to peptide hormone stimulus    26/144
## GO:1901653 GO:1901653                  cellular response to peptide    27/144
## GO:0062197 GO:0062197          cellular response to chemical stress    25/144
## GO:0018105 GO:0018105               peptidyl-serine phosphorylation    24/144
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0043434 438/18888 1.574587e-22 7.410008e-19 3.353042e-19
## GO:0051402 292/18888 9.814675e-22 2.309393e-18 1.045005e-18
## GO:0071375 311/18888 7.712721e-20 1.209869e-16 5.474679e-17
## GO:1901653 376/18888 7.213021e-19 8.486120e-16 3.839985e-16
## GO:0062197 311/18888 1.091608e-18 1.027421e-15 4.649100e-16
## GO:0018105 282/18888 1.523075e-18 1.194599e-15 5.405581e-16
##                                                                                                                                                                                               geneID
## GO:0043434 AKT2/ERRFI1/RB1/PTK2/CDKN1B/IRS1/PIK3R1/PIK3R2/RAF1/PTGS2/SHC1/AKT1/STAT5A/STAT3/PARP1/MTOR/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/PXN/EEF2K/PRKCD/CAV1/TFF1/PIK3CA/RPS6KB1/BRAF/COL6A1/TSC1/XBP1
## GO:0051402                                AKT2/G6PD/BCL2/ERBB3/KRAS/RB1/CCND1/BCL2L11/FOXO3/BCL2L1/ATM/PARP1/XIAP/CASP8/CTNNB1/GSK3B/DIABLO/AKT1S1/BID/AXL/MSH2/CASP3/GAPDH/PIK3CA/BRAF/COL6A1/GATA3
## GO:0071375                                    AKT2/RB1/PTK2/IRS1/PIK3R1/PIK3R2/RAF1/SHC1/AKT1/STAT5A/STAT3/PARP1/MTOR/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/PXN/EEF2K/PRKCD/CAV1/PIK3CA/RPS6KB1/COL6A1/XBP1
## GO:1901653                              AKT2/RB1/PTK2/IRS1/PIK3R1/PIK3R2/RAF1/SHC1/FOXO3/AKT1/STAT5A/STAT3/PARP1/MTOR/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/PXN/EEF2K/PRKCD/CAV1/PIK3CA/RPS6KB1/COL6A1/XBP1
## GO:0062197                                                    MET/G6PD/HSPA1A/EGFR/JUN/EZH2/PTGS2/FOXO3/AKT1/ATM/PARP1/CDK1/MTOR/MAPT/PRKAA1/MAPK1/MAPK8/PXN/BECN1/PRKCD/AXL/CAV1/CASP3/PRDX1/PIK3CA
## GO:0018105                                                      AKT2/PTEN/BCL2/EGFR/RAF1/PTGS2/AKT1/ATM/CDK1/EIF4G1/MTOR/GSK3B/PRKAA1/PRKCA/MAPK1/MAPK8/TFRC/PRKCD/CAV1/RET/RPS6KB1/NEK7/RICTOR/BRAF
##            Count
## GO:0043434    32
## GO:0051402    27
## GO:0071375    26
## GO:1901653    27
## GO:0062197    25
## GO:0018105    24
##                    ID
## GO:0005925 GO:0005925
## GO:0030055 GO:0030055
## GO:0000781 GO:0000781
## GO:0031968 GO:0031968
## GO:0019867 GO:0019867
## GO:0061695 GO:0061695
##                                                               Description
## GO:0005925                                                 focal adhesion
## GO:0030055                                        cell-substrate junction
## GO:0000781                                   chromosome, telomeric region
## GO:0031968                                       organelle outer membrane
## GO:0019867                                                 outer membrane
## GO:0061695 transferase complex, transferring phosphorus-containing groups
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0005925    19/144 421/19894 2.197096e-10 6.229460e-08 3.518984e-08
## GO:0030055    19/144 431/19894 3.261497e-10 6.229460e-08 3.518984e-08
## GO:0000781    12/144 173/19894 4.888511e-09 6.224704e-07 3.516297e-07
## GO:0031968    12/144 248/19894 2.615972e-07 2.178682e-05 1.230724e-05
## GO:0019867    12/144 250/19894 2.851678e-07 2.178682e-05 1.230724e-05
## GO:0061695    13/144 308/19894 3.911056e-07 2.490039e-05 1.406608e-05
##                                                                                                                 geneID
## GO:0005925 HSPA1A/KRAS/MYH9/PTK2/EGFR/PIK3R2/SHC1/YWHAZ/CTNNB1/ITGA2/MAPK1/PXN/YWHAE/YWHAB/CAV1/ANXA1/TGM2/CDH2/CTNNA1
## GO:0030055 HSPA1A/KRAS/MYH9/PTK2/EGFR/PIK3R2/SHC1/YWHAZ/CTNNB1/ITGA2/MAPK1/PXN/YWHAE/YWHAB/CAV1/ANXA1/TGM2/CDH2/CTNNA1
## GO:0000781                                        EZH2/ATM/PARP1/CDK1/CHEK1/RAD51/ERCC1/CHEK2/MSH2/XRCC1/TP53BP1/RAD50
## GO:0031968                                      BCL2/KRAS/BCL2L11/RAF1/PTGS2/FOXO3/BCL2L1/CASP8/MTOR/BECN1/BID/RPS6KB1
## GO:0019867                                      BCL2/KRAS/BCL2L11/RAF1/PTGS2/FOXO3/BCL2L1/CASP8/MTOR/BECN1/BID/RPS6KB1
## GO:0061695                              RB1/CCND1/CDKN1A/IRS1/PIK3R1/PIK3R2/CDK1/IGF1R/PRKAA1/BECN1/CCNE2/CCNE1/PIK3CA
##            Count
## GO:0005925    19
## GO:0030055    19
## GO:0000781    12
## GO:0031968    12
## GO:0019867    12
## GO:0061695    13
##                    ID                               Description GeneRatio
## GO:0032143 GO:0032143          single thymine insertion binding      2/18
## GO:0032137 GO:0032137           guanine/thymine mispair binding      2/18
## GO:0032142 GO:0032142          single guanine insertion binding      2/18
## GO:0032138 GO:0032138 single base insertion or deletion binding      2/18
## GO:0032135 GO:0032135         DNA insertion or deletion binding      2/18
## GO:0032405 GO:0032405                 MutLalpha complex binding      2/18
##            BgRatio       pvalue     p.adjust       qvalue    geneID Count
## GO:0032143 2/18522 8.920088e-07 0.0001497712 6.381227e-05 MSH6/MSH2     2
## GO:0032137 3/18522 2.674485e-06 0.0001497712 6.381227e-05 MSH6/MSH2     2
## GO:0032142 3/18522 2.674485e-06 0.0001497712 6.381227e-05 MSH6/MSH2     2
## GO:0032138 4/18522 5.345889e-06 0.0002245274 9.566328e-05 MSH6/MSH2     2
## GO:0032135 6/18522 1.334933e-05 0.0003737814 1.592552e-04 MSH6/MSH2     2
## GO:0032405 6/18522 1.334933e-05 0.0003737814 1.592552e-04 MSH6/MSH2     2
##                    ID
## GO:0002520 GO:0002520
## GO:0051053 GO:0051053
## GO:0035051 GO:0035051
## GO:0002562 GO:0002562
## GO:0016444 GO:0016444
## GO:0002200 GO:0002200
##                                                                                             Description
## GO:0002520                                                                    immune system development
## GO:0051053                                                 negative regulation of DNA metabolic process
## GO:0035051                                                                   cardiocyte differentiation
## GO:0002562 somatic diversification of immune receptors via germline recombination within a single locus
## GO:0016444                                                               somatic cell DNA recombination
## GO:0002200                                                  somatic diversification of immune receptors
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0002520      6/18 197/18888 1.995120e-08 3.034578e-05 1.516292e-05
## GO:0051053      5/18 142/18888 1.772137e-07 1.347710e-04 6.734120e-05
## GO:0035051      5/18 165/18888 3.741687e-07 1.548067e-04 7.735245e-05
## GO:0002562      4/18  70/18888 5.088977e-07 1.548067e-04 7.735245e-05
## GO:0016444      4/18  70/18888 5.088977e-07 1.548067e-04 7.735245e-05
## GO:0002200      4/18  76/18888 7.095469e-07 1.798701e-04 8.987595e-05
##                                    geneID Count
## GO:0002520 ATM/MSH6/TFRC/RBM15/GATA3/MSH2     6
## GO:0051053       ATM/TTF1/MSH6/GATA3/MSH2     5
## GO:0035051     G6PD/PDCD4/MYH11/EGFR/TSC1     5
## GO:0002562             ATM/MSH6/TFRC/MSH2     4
## GO:0016444             ATM/MSH6/TFRC/MSH2     4
## GO:0002200             ATM/MSH6/TFRC/MSH2     4
##                    ID             Description GeneRatio   BgRatio       pvalue
## GO:0032301 GO:0032301       MutSalpha complex      2/18   2/19894 7.732128e-07
## GO:0032300 GO:0032300 mismatch repair complex      2/18  11/19894 4.232193e-05
## GO:0042470 GO:0042470              melanosome      3/18 112/19894 1.332719e-04
## GO:0048770 GO:0048770         pigment granule      3/18 112/19894 1.332719e-04
## GO:0032302 GO:0032302        MutSbeta complex      1/18   2/19894 1.808818e-03
## GO:0070435 GO:0070435        Shc-EGFR complex      1/18   2/19894 1.808818e-03
##                p.adjust       qvalue          geneID Count
## GO:0032301 6.804273e-05 3.906759e-05       MSH6/MSH2     2
## GO:0032300 1.862165e-03 1.069186e-03       MSH6/MSH2     2
## GO:0042470 2.931983e-03 1.683435e-03 FASN/MYH11/TFRC     3
## GO:0048770 2.931983e-03 1.683435e-03 FASN/MYH11/TFRC     3
## GO:0032302 2.593940e-02 1.489344e-02            MSH2     1
## GO:0070435 2.593940e-02 1.489344e-02            EGFR     1
##                    ID
## GO:0032143 GO:0032143
## GO:0032137 GO:0032137
## GO:0032142 GO:0032142
## GO:0032138 GO:0032138
## GO:0106017 GO:0106017
## GO:0032135 GO:0032135
##                                                           Description GeneRatio
## GO:0032143                           single thymine insertion binding      2/25
## GO:0032137                            guanine/thymine mispair binding      2/25
## GO:0032142                           single guanine insertion binding      2/25
## GO:0032138                  single base insertion or deletion binding      2/25
## GO:0106017 phosphatidylinositol-3,4-bisphosphate phosphatase activity      2/25
## GO:0032135                          DNA insertion or deletion binding      2/25
##            BgRatio       pvalue     p.adjust       qvalue      geneID Count
## GO:0032143 2/18522 1.749037e-06 0.0003477701 0.0001655610   MSH6/MSH2     2
## GO:0032137 3/18522 5.242766e-06 0.0003477701 0.0001655610   MSH6/MSH2     2
## GO:0032142 3/18522 5.242766e-06 0.0003477701 0.0001655610   MSH6/MSH2     2
## GO:0032138 4/18522 1.047685e-05 0.0004169787 0.0001985088   MSH6/MSH2     2
## GO:0106017 4/18522 1.047685e-05 0.0004169787 0.0001985088 PTEN/INPP4B     2
## GO:0032135 6/18522 2.614878e-05 0.0007433725 0.0003538933   MSH6/MSH2     2
##                    ID
## GO:0002520 GO:0002520
## GO:0002285 GO:0002285
## GO:0051053 GO:0051053
## GO:0002562 GO:0002562
## GO:0016444 GO:0016444
## GO:0002366 GO:0002366
##                                                                                             Description
## GO:0002520                                                                    immune system development
## GO:0002285                                            lymphocyte activation involved in immune response
## GO:0051053                                                 negative regulation of DNA metabolic process
## GO:0002562 somatic diversification of immune receptors via germline recombination within a single locus
## GO:0016444                                                               somatic cell DNA recombination
## GO:0002366                                             leukocyte activation involved in immune response
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0002520      6/25 197/18888 1.791009e-07 0.0002446131 0.0001268547
## GO:0002285      6/25 212/18888 2.760870e-07 0.0002446131 0.0001268547
## GO:0051053      5/25 142/18888 1.053320e-06 0.0004780573 0.0002479173
## GO:0002562      4/25  70/18888 2.062995e-06 0.0004780573 0.0002479173
## GO:0016444      4/25  70/18888 2.062995e-06 0.0004780573 0.0002479173
## GO:0002366      6/25 301/18888 2.138290e-06 0.0004780573 0.0002479173
##                                    geneID Count
## GO:0002520 TFRC/GATA3/MSH6/ATM/RBM15/MSH2     6
## GO:0002285 TFRC/GATA3/MSH6/MSH2/TSC1/XBP1     6
## GO:0051053       GATA3/MSH6/ATM/MSH2/TTF1     5
## GO:0002562             TFRC/MSH6/ATM/MSH2     4
## GO:0016444             TFRC/MSH6/ATM/MSH2     4
## GO:0002366 TFRC/GATA3/MSH6/MSH2/TSC1/XBP1     6
##                    ID             Description GeneRatio   BgRatio       pvalue
## GO:0032301 GO:0032301       MutSalpha complex      2/25   2/19894 1.516104e-06
## GO:0042470 GO:0042470              melanosome      4/25 112/19894 1.099122e-05
## GO:0048770 GO:0048770         pigment granule      4/25 112/19894 1.099122e-05
## GO:0032300 GO:0032300 mismatch repair complex      2/25  11/19894 8.280912e-05
## GO:0032302 GO:0032302        MutSbeta complex      1/25   2/19894 2.511804e-03
## GO:0070435 GO:0070435        Shc-EGFR complex      1/25   2/19894 2.511804e-03
##                p.adjust       qvalue                geneID Count
## GO:0032301 0.0001607070 9.415801e-05             MSH6/MSH2     2
## GO:0042470 0.0003883566 2.275376e-04 TFRC/FASN/MYH11/PRDX1     4
## GO:0048770 0.0003883566 2.275376e-04 TFRC/FASN/MYH11/PRDX1     4
## GO:0032300 0.0021944418 1.285721e-03             MSH6/MSH2     2
## GO:0032302 0.0391261253 2.292395e-02                  MSH2     1
## GO:0070435 0.0391261253 2.292395e-02                  EGFR     1
##                    ID                               Description GeneRatio
## GO:0045296 GO:0045296                          cadherin binding     13/48
## GO:0031625 GO:0031625          ubiquitin protein ligase binding      9/48
## GO:0044389 GO:0044389     ubiquitin-like protein ligase binding      9/48
## GO:0019207 GO:0019207                 kinase regulator activity      7/48
## GO:0045309 GO:0045309 protein phosphorylated amino acid binding      4/48
## GO:0019903 GO:0019903               protein phosphatase binding      5/48
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0045296 333/18522 1.779006e-12 4.999007e-10 2.602967e-10
## GO:0031625 305/18522 7.553584e-08 1.061279e-05 5.526043e-06
## GO:0044389 324/18522 1.263639e-07 1.183608e-05 6.163010e-06
## GO:0019207 270/18522 5.717796e-06 4.016752e-04 2.091510e-04
## GO:0045309  59/18522 1.627145e-05 9.144552e-04 4.761539e-04
## GO:0019903 142/18522 3.241437e-05 1.518073e-03 7.904558e-04
##                                                                                 geneID
## GO:0045296 EEF2/HSPA1A/CTNNB1/CDH2/FASN/ANXA1/NDRG1/CTNNA1/MYH9/YWHAZ/YWHAB/KDR/NOTCH3
## GO:0031625                    SQSTM1/HSPA1A/CTNNB1/ERBB3/CDKN1A/YWHAZ/PARP1/JUN/TUBA1B
## GO:0044389                    SQSTM1/HSPA1A/CTNNB1/ERBB3/CDKN1A/YWHAZ/PARP1/JUN/TUBA1B
## GO:0019207                                 ERBB3/PIK3R1/CCND1/CDKN1A/AKT1/YWHAB/PIK3R2
## GO:0045309                                                   PIK3R1/YWHAZ/YWHAB/PIK3R2
## GO:0019903                                               CTNNB1/CDH2/PIK3R1/PXN/PIK3R2
##            Count
## GO:0045296    13
## GO:0031625     9
## GO:0044389     9
## GO:0019207     7
## GO:0045309     4
## GO:0019903     5
##                    ID                                         Description
## GO:0045785 GO:0045785                positive regulation of cell adhesion
## GO:0071375 GO:0071375       cellular response to peptide hormone stimulus
## GO:0031400 GO:0031400 negative regulation of protein modification process
## GO:0043434 GO:0043434                         response to peptide hormone
## GO:0030099 GO:0030099                        myeloid cell differentiation
## GO:0048660 GO:0048660      regulation of smooth muscle cell proliferation
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0045785     12/48 485/18888 2.159693e-09 5.173694e-06 2.554297e-06
## GO:0071375     10/48 311/18888 4.767583e-09 5.173694e-06 2.554297e-06
## GO:0031400     11/48 426/18888 7.205508e-09 5.173694e-06 2.554297e-06
## GO:0043434     11/48 438/18888 9.603336e-09 5.173694e-06 2.554297e-06
## GO:0030099     11/48 439/18888 9.832181e-09 5.173694e-06 2.554297e-06
## GO:0048660      8/48 174/18888 1.216801e-08 5.335674e-06 2.634268e-06
##                                                                          geneID
## GO:0045785    TGM2/IGFBP2/PRKCA/ANXA1/FN1/PREX1/AKT1/ITGA2/TFRC/KDR/PIK3R2/XBP1
## GO:0071375           COL6A1/PRKCA/PIK3R1/PXN/AKT2/AKT1/PARP1/STAT5A/PIK3R2/XBP1
## GO:0031400 SQSTM1/HSPA1A/CTNNB1/G6PD/PDCD4/ERRFI1/CDKN1A/AKT1/ADAR/YWHAB/EIF4G1
## GO:0043434    COL6A1/PRKCA/PIK3R1/PXN/ERRFI1/AKT2/AKT1/PARP1/STAT5A/PIK3R2/XBP1
## GO:0030099     HSPA1A/CTNNB1/FASN/PRKCA/G6PD/PIK3R1/MYH9/ADAR/TFRC/PARP1/STAT5A
## GO:0048660                     CTNNB1/PDCD4/PIK3R1/CDKN1A/AKT1/ITGA2/JUN/NOTCH3
##            Count
## GO:0045785    12
## GO:0071375    10
## GO:0031400    11
## GO:0043434    11
## GO:0030099    11
## GO:0048660     8
##                    ID                     Description GeneRatio   BgRatio
## GO:0005925 GO:0005925                  focal adhesion     12/48 421/19894
## GO:0030055 GO:0030055         cell-substrate junction     12/48 431/19894
## GO:0005912 GO:0005912               adherens junction      6/48 188/19894
## GO:0016342 GO:0016342                 catenin complex      3/48  31/19894
## GO:0019898 GO:0019898 extrinsic component of membrane      5/48 177/19894
## GO:0031252 GO:0031252               cell leading edge      7/48 426/19894
##                  pvalue     p.adjust       qvalue
## GO:0005925 2.416166e-10 3.665730e-08 1.812906e-08
## GO:0030055 3.160112e-10 3.665730e-08 1.812906e-08
## GO:0005912 5.801947e-06 4.486839e-04 2.218990e-04
## GO:0016342 5.650618e-05 2.444049e-03 1.208718e-03
## GO:0019898 6.617899e-05 2.444049e-03 1.208718e-03
## GO:0031252 6.780532e-05 2.444049e-03 1.208718e-03
##                                                                            geneID
## GO:0005925 TGM2/HSPA1A/CTNNB1/CDH2/ANXA1/CTNNA1/MYH9/PXN/YWHAZ/ITGA2/YWHAB/PIK3R2
## GO:0030055 TGM2/HSPA1A/CTNNB1/CDH2/ANXA1/CTNNA1/MYH9/PXN/YWHAZ/ITGA2/YWHAB/PIK3R2
## GO:0005912                                    CTNNB1/CDH2/ANXA1/NDRG1/CTNNA1/MYH9
## GO:0016342                                                     CTNNB1/CDH2/CTNNA1
## GO:0019898                                       CTNNB1/CDH2/CTNNA1/PIK3R1/PIK3R2
## GO:0031252                                  CTNNB1/CDH2/CTNNA1/MYH9/PXN/AKT2/AKT1
##            Count
## GO:0005925    12
## GO:0030055    12
## GO:0005912     6
## GO:0016342     3
## GO:0019898     5
## GO:0031252     7
##                    ID                               Description GeneRatio
## GO:0045296 GO:0045296                          cadherin binding     10/45
## GO:0044389 GO:0044389     ubiquitin-like protein ligase binding      8/45
## GO:0019903 GO:0019903               protein phosphatase binding      6/45
## GO:0019902 GO:0019902                       phosphatase binding      6/45
## GO:0031625 GO:0031625          ubiquitin protein ligase binding      7/45
## GO:0045309 GO:0045309 protein phosphorylated amino acid binding      4/45
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0045296 333/18522 5.630025e-09 1.649597e-06 7.763508e-07
## GO:0044389 324/18522 9.868523e-07 1.135853e-04 5.345669e-05
## GO:0019903 142/18522 1.162989e-06 1.135853e-04 5.345669e-05
## GO:0019902 189/18522 6.100384e-06 4.468531e-04 2.103027e-04
## GO:0031625 305/18522 8.133231e-06 4.766073e-04 2.243060e-04
## GO:0045309  59/18522 1.254850e-05 6.127850e-04 2.883953e-04
##                                                               geneID Count
## GO:0045296 EEF2/HSPA1A/CTNNB1/CDH2/FASN/NDRG1/YWHAE/PARK7/MYH9/ANXA1    10
## GO:0044389        HSPA1A/CTNNB1/SQSTM1/TUBA1B/CDKN1A/YWHAE/JUN/CCNB1     8
## GO:0019903                       CTNNB1/CDH2/PIK3R2/YWHAE/PXN/PIK3R1     6
## GO:0019902                       CTNNB1/CDH2/PIK3R2/YWHAE/PXN/PIK3R1     6
## GO:0031625              HSPA1A/CTNNB1/SQSTM1/TUBA1B/CDKN1A/YWHAE/JUN     7
## GO:0045309                                  PIK3R2/SHC1/YWHAE/PIK3R1     4
##                    ID                                            Description
## GO:0031400 GO:0031400    negative regulation of protein modification process
## GO:0034504 GO:0034504                        protein localization to nucleus
## GO:0030099 GO:0030099                           myeloid cell differentiation
## GO:1900182 GO:1900182 positive regulation of protein localization to nucleus
## GO:1903829 GO:1903829            positive regulation of protein localization
## GO:0048009 GO:0048009  insulin-like growth factor receptor signaling pathway
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0031400     12/45 426/18888 2.179360e-10 5.760047e-07 2.943282e-07
## GO:0034504      9/45 311/18888 4.173133e-08 5.514796e-05 2.817963e-05
## GO:0030099     10/45 439/18888 6.400455e-08 5.638801e-05 2.881328e-05
## GO:1900182      6/45  94/18888 9.004280e-08 5.949578e-05 3.040129e-05
## GO:1903829     10/45 483/18888 1.557480e-07 6.364657e-05 3.252227e-05
## GO:0048009      5/45  53/18888 1.608698e-07 6.364657e-05 3.252227e-05
##                                                                               geneID
## GO:0031400 HSPA1A/CTNNB1/SQSTM1/ADAR/CDKN1A/AKT1/YWHAE/EIF4G1/G6PD/PARK7/PRKCD/PDCD4
## GO:0034504                   SQSTM1/TFRC/CDKN1A/PIK3R2/AKT1/YWHAE/PIK3R1/PARK7/PRKCD
## GO:0030099                  HSPA1A/CTNNB1/ADAR/TFRC/FASN/PRKCA/PIK3R1/G6PD/MYH9/BAP1
## GO:1900182                                       TFRC/PIK3R2/AKT1/PIK3R1/PARK7/PRKCD
## GO:1903829              SQSTM1/TFRC/PIK3R2/AKT1/YWHAE/EIF4G1/PIK3R1/PARK7/PRKCD/BAP1
## GO:0048009                                            COL6A1/SHC1/AKT1/IGFBP2/PIK3R1
##            Count
## GO:0031400    12
## GO:0034504     9
## GO:0030099    10
## GO:1900182     6
## GO:1903829    10
## GO:0048009     5
##                    ID                              Description GeneRatio
## GO:0005925 GO:0005925                           focal adhesion     11/45
## GO:0030055 GO:0030055                  cell-substrate junction     11/45
## GO:0005912 GO:0005912                        adherens junction      6/45
## GO:0062023 GO:0062023 collagen-containing extracellular matrix      7/45
## GO:0016235 GO:0016235                                aggresome      3/45
## GO:0005916 GO:0005916                          fascia adherens      2/45
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0005925 421/19894 1.779464e-09 2.683762e-07 1.364625e-07
## GO:0030055 431/19894 2.274374e-09 2.683762e-07 1.364625e-07
## GO:0005912 188/19894 3.942557e-06 3.101478e-04 1.577023e-04
## GO:0062023 428/19894 4.549194e-05 2.684024e-03 1.364758e-03
## GO:0016235  35/19894 6.728824e-05 3.176005e-03 1.614918e-03
## GO:0005916   9/19894 1.783048e-04 5.259990e-03 2.674571e-03
##                                                                    geneID Count
## GO:0005925 HSPA1A/CTNNB1/CDH2/PIK3R2/SHC1/ITGA2/YWHAE/TGM2/PXN/MYH9/ANXA1    11
## GO:0030055 HSPA1A/CTNNB1/CDH2/PIK3R2/SHC1/ITGA2/YWHAE/TGM2/PXN/MYH9/ANXA1    11
## GO:0005912                             CTNNB1/CDH2/NDRG1/PARK7/MYH9/ANXA1     6
## GO:0062023                      FN1/CDH2/SERPINE1/COL6A1/TGM2/ANXA1/ANXA7     7
## GO:0016235                                             EEF2/HSPA1A/SQSTM1     3
## GO:0005916                                                    CTNNB1/CDH2     2
##                    ID                               Description GeneRatio
## GO:0045296 GO:0045296                          cadherin binding     14/53
## GO:0031625 GO:0031625          ubiquitin protein ligase binding     10/53
## GO:0044389 GO:0044389     ubiquitin-like protein ligase binding     10/53
## GO:0019903 GO:0019903               protein phosphatase binding      7/53
## GO:0045309 GO:0045309 protein phosphorylated amino acid binding      5/53
## GO:0019902 GO:0019902                       phosphatase binding      7/53
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0045296 333/18522 3.587395e-13 1.040345e-10 5.324449e-11
## GO:0031625 305/18522 1.319362e-08 1.913075e-06 9.791055e-07
## GO:0044389 324/18522 2.339069e-08 2.261100e-06 1.157224e-06
## GO:0019903 142/18522 1.540591e-07 1.116928e-05 5.716403e-06
## GO:0045309  59/18522 7.041119e-07 4.083849e-05 2.090101e-05
## GO:0019902 189/18522 1.068580e-06 5.164805e-05 2.643330e-05
##                                                                                       geneID
## GO:0045296 HSPA1A/EEF2/CDH2/FASN/CTNNB1/ANXA1/NDRG1/CTNNA1/MYH9/YWHAZ/KDR/YWHAE/NOTCH3/YWHAB
## GO:0031625                    SQSTM1/HSPA1A/ERBB3/CTNNB1/YWHAZ/PARP1/CDKN1A/JUN/TUBA1B/YWHAE
## GO:0044389                    SQSTM1/HSPA1A/ERBB3/CTNNB1/YWHAZ/PARP1/CDKN1A/JUN/TUBA1B/YWHAE
## GO:0019903                                           CDH2/CTNNB1/PIK3R1/PXN/PIK3R2/YWHAE/MET
## GO:0045309                                                   PIK3R1/YWHAZ/PIK3R2/YWHAE/YWHAB
## GO:0019902                                           CDH2/CTNNB1/PIK3R1/PXN/PIK3R2/YWHAE/MET
##            Count
## GO:0045296    14
## GO:0031625    10
## GO:0044389    10
## GO:0019903     7
## GO:0045309     5
## GO:0019902     7
##                    ID                                         Description
## GO:0001667 GO:0001667                       ameboidal-type cell migration
## GO:0010634 GO:0010634    positive regulation of epithelial cell migration
## GO:0031400 GO:0031400 negative regulation of protein modification process
## GO:0030099 GO:0030099                        myeloid cell differentiation
## GO:0010631 GO:0010631                           epithelial cell migration
## GO:0090132 GO:0090132                                epithelium migration
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0001667     13/53 498/18888 8.183022e-10 1.536984e-06 7.851378e-07
## GO:0010634      9/53 177/18888 1.413038e-09 1.536984e-06 7.851378e-07
## GO:0031400     12/53 426/18888 1.717301e-09 1.536984e-06 7.851378e-07
## GO:0030099     12/53 439/18888 2.410056e-09 1.617750e-06 8.263955e-07
## GO:0010631     11/53 375/18888 5.896643e-09 2.195806e-06 1.121684e-06
## GO:0090132     11/53 378/18888 6.404612e-09 2.195806e-06 1.121684e-06
##                                                                                geneID
## GO:0001667        CDH2/PRKCA/ANXA1/FN1/MYH9/PXN/KDR/AKT1/ITGA2/RAB11A/ETS1/STAT5A/MET
## GO:0010634                          PRKCA/ANXA1/KDR/AKT1/ITGA2/RAB11A/ETS1/STAT5A/MET
## GO:0031400 SQSTM1/HSPA1A/CTNNB1/PDCD4/G6PD/ERRFI1/CDKN1A/EIF4G1/AKT1/YWHAE/ADAR/YWHAB
## GO:0030099      HSPA1A/PRKCA/FASN/CTNNB1/G6PD/PIK3R1/MYH9/TFRC/PARP1/ETS1/STAT5A/ADAR
## GO:0010631                 PRKCA/ANXA1/MYH9/PXN/KDR/AKT1/ITGA2/RAB11A/ETS1/STAT5A/MET
## GO:0090132                 PRKCA/ANXA1/MYH9/PXN/KDR/AKT1/ITGA2/RAB11A/ETS1/STAT5A/MET
##            Count
## GO:0001667    13
## GO:0010634     9
## GO:0031400    12
## GO:0030099    12
## GO:0010631    11
## GO:0090132    11
##                    ID             Description GeneRatio   BgRatio       pvalue
## GO:0005925 GO:0005925          focal adhesion     13/53 421/19894 5.544249e-11
## GO:0030055 GO:0030055 cell-substrate junction     13/53 431/19894 7.413751e-11
## GO:0005912 GO:0005912       adherens junction      6/53 188/19894 1.043748e-05
## GO:0042470 GO:0042470              melanosome      5/53 112/19894 1.196057e-05
## GO:0048770 GO:0048770         pigment granule      5/53 112/19894 1.196057e-05
## GO:0045178 GO:0045178      basal part of cell      7/53 305/19894 1.565599e-05
##                p.adjust       qvalue
## GO:0005925 8.933570e-09 4.643349e-09
## GO:0030055 8.933570e-09 4.643349e-09
## GO:0005912 5.764993e-04 2.996437e-04
## GO:0042470 5.764993e-04 2.996437e-04
## GO:0048770 5.764993e-04 2.996437e-04
## GO:0045178 6.288488e-04 3.268530e-04
##                                                                                  geneID
## GO:0005925 TGM2/HSPA1A/CDH2/CTNNB1/ANXA1/CTNNA1/MYH9/YWHAZ/PXN/PIK3R2/ITGA2/YWHAE/YWHAB
## GO:0030055 TGM2/HSPA1A/CDH2/CTNNB1/ANXA1/CTNNA1/MYH9/YWHAZ/PXN/PIK3R2/ITGA2/YWHAE/YWHAB
## GO:0005912                                          CDH2/CTNNB1/ANXA1/NDRG1/CTNNA1/MYH9
## GO:0042470                                                  FASN/YWHAZ/TFRC/YWHAE/YWHAB
## GO:0048770                                                  FASN/YWHAZ/TFRC/YWHAE/YWHAB
## GO:0045178                                       ERBB3/CDH2/CTNNB1/ANXA1/TFRC/ITGA2/MET
##            Count
## GO:0005925    13
## GO:0030055    13
## GO:0005912     6
## GO:0042470     5
## GO:0048770     5
## GO:0045178     7
##                    ID                               Description GeneRatio
## GO:0045296 GO:0045296                          cadherin binding     12/49
## GO:0045309 GO:0045309 protein phosphorylated amino acid binding      5/49
## GO:0019902 GO:0019902                       phosphatase binding      7/49
## GO:0044389 GO:0044389     ubiquitin-like protein ligase binding      8/49
## GO:0019903 GO:0019903               protein phosphatase binding      6/49
## GO:0030971 GO:0030971          receptor tyrosine kinase binding      5/49
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0045296 333/18522 4.758727e-11 1.489481e-08 6.762401e-09
## GO:0045309  59/18522 4.724478e-07 6.430525e-05 2.919525e-05
## GO:0019902 189/18522 6.163443e-07 6.430525e-05 2.919525e-05
## GO:0044389 324/18522 1.942916e-06 1.207549e-04 5.482397e-05
## GO:0019903 142/18522 1.947041e-06 1.207549e-04 5.482397e-05
## GO:0030971  81/18522 2.314790e-06 1.207549e-04 5.482397e-05
##                                                                           geneID
## GO:0045296 HSPA1A/EEF2/CTNNB1/CDH2/FASN/YWHAE/NDRG1/ANXA1/MYH9/PARK7/ANLN/CTNNA1
## GO:0045309                                        SHC1/PIK3R2/YWHAE/MAPK1/PIK3R1
## GO:0019902                             CTNNB1/CDH2/PIK3R2/YWHAE/PXN/MAPK1/PIK3R1
## GO:0044389                    SQSTM1/HSPA1A/CTNNB1/TUBA1B/CDKN1A/YWHAE/JUN/CCNB1
## GO:0019903                                   CTNNB1/CDH2/PIK3R2/YWHAE/PXN/PIK3R1
## GO:0030971                                        SQSTM1/SHC1/PIK3R2/PCNA/PIK3R1
##            Count
## GO:0045296    12
## GO:0045309     5
## GO:0019902     7
## GO:0044389     8
## GO:0019903     6
## GO:0030971     5
##                    ID                                         Description
## GO:0034504 GO:0034504                     protein localization to nucleus
## GO:0031400 GO:0031400 negative regulation of protein modification process
## GO:0034599 GO:0034599               cellular response to oxidative stress
## GO:0032075 GO:0032075            positive regulation of nuclease activity
## GO:0000302 GO:0000302                 response to reactive oxygen species
## GO:1900180 GO:1900180       regulation of protein localization to nucleus
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0034504     11/49 311/18888 3.375982e-10 6.119571e-07 3.087600e-07
## GO:0031400     12/49 426/18888 6.443749e-10 6.119571e-07 3.087600e-07
## GO:0034599     10/49 248/18888 6.661362e-10 6.119571e-07 3.087600e-07
## GO:0032075      4/49   7/18888 1.390814e-09 9.582708e-07 4.834909e-07
## GO:0000302      9/49 203/18888 2.269570e-09 1.250987e-06 6.311792e-07
## GO:1900180      8/49 144/18888 3.250569e-09 1.304111e-06 6.579826e-07
##                                                                               geneID
## GO:0034504       SQSTM1/TFRC/CDKN1A/PIK3R2/YWHAE/AKT1/PRKCD/PARK7/PIK3R1/CDK1/CTNNA1
## GO:0031400 SQSTM1/HSPA1A/CTNNB1/ADAR/CDKN1A/YWHAE/EIF4G1/AKT1/PDCD4/G6PD/PRKCD/PARK7
## GO:0034599                      HSPA1A/PXN/AKT1/JUN/PCNA/G6PD/PRKCD/MAPK1/PARK7/CDK1
## GO:0032075                                                    HSPA1A/AKT1/PCNA/PRKCD
## GO:0000302                           COL6A1/PXN/AKT1/JUN/PCNA/PRKCD/MAPK1/PARK7/CDK1
## GO:1900180                           TFRC/PIK3R2/AKT1/PRKCD/PARK7/PIK3R1/CDK1/CTNNA1
##            Count
## GO:0034504    11
## GO:0031400    12
## GO:0034599    10
## GO:0032075     4
## GO:0000302     9
## GO:1900180     8
##                    ID                                        Description
## GO:0005925 GO:0005925                                     focal adhesion
## GO:0030055 GO:0030055                            cell-substrate junction
## GO:0000307 GO:0000307 cyclin-dependent protein kinase holoenzyme complex
## GO:0005912 GO:0005912                                  adherens junction
## GO:0070557 GO:0070557                                   PCNA-p21 complex
## GO:0097125 GO:0097125                             cyclin B1-CDK1 complex
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0005925     13/49 421/19894 1.868462e-11 3.166591e-09 1.620515e-09
## GO:0030055     13/49 431/19894 2.503234e-11 3.166591e-09 1.620515e-09
## GO:0000307      5/49  56/19894 2.554437e-07 2.154242e-05 1.102441e-05
## GO:0005912      7/49 188/19894 3.696901e-07 2.338290e-05 1.196628e-05
## GO:0070557      2/49   2/19894 5.943126e-06 2.506018e-04 1.282464e-04
## GO:0097125      2/49   2/19894 5.943126e-06 2.506018e-04 1.282464e-04
##                                                                                 geneID
## GO:0005925 HSPA1A/CTNNB1/CDH2/SHC1/PIK3R2/ITGA2/YWHAE/TGM2/PXN/ANXA1/MYH9/MAPK1/CTNNA1
## GO:0030055 HSPA1A/CTNNB1/CDH2/SHC1/PIK3R2/ITGA2/YWHAE/TGM2/PXN/ANXA1/MYH9/MAPK1/CTNNA1
## GO:0000307                                                CCND1/CDKN1A/PCNA/CCNB1/CDK1
## GO:0005912                                   CTNNB1/CDH2/NDRG1/ANXA1/MYH9/PARK7/CTNNA1
## GO:0070557                                                                 CDKN1A/PCNA
## GO:0097125                                                                  CCNB1/CDK1
##            Count
## GO:0005925    13
## GO:0030055    13
## GO:0000307     5
## GO:0005912     7
## GO:0070557     2
## GO:0097125     2
##                    ID                              Description GeneRatio
## GO:0031625 GO:0031625         ubiquitin protein ligase binding    20/130
## GO:0044389 GO:0044389    ubiquitin-like protein ligase binding    20/130
## GO:0019903 GO:0019903              protein phosphatase binding    14/130
## GO:0019902 GO:0019902                      phosphatase binding    15/130
## GO:0019207 GO:0019207                kinase regulator activity    16/130
## GO:0140297 GO:0140297 DNA-binding transcription factor binding    20/130
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0031625 305/18522 3.777491e-14 2.047400e-11 1.041792e-11
## GO:0044389 324/18522 1.178373e-13 3.193392e-11 1.624915e-11
## GO:0019903 142/18522 1.294257e-12 2.338291e-10 1.189808e-10
## GO:0019902 189/18522 4.697829e-12 6.365558e-10 3.239029e-10
## GO:0019207 270/18522 7.338435e-11 7.954864e-09 4.047726e-09
## GO:0140297 478/18522 1.408162e-10 1.168562e-08 5.946070e-09
##                                                                                                                           geneID
## GO:0031625 BCL2/ERBB3/RB1/CDKN1A/CDKN1B/EGFR/JUN/YWHAZ/PARP1/CASP8/CTNNB1/GSK3B/YWHAE/BECN1/TUBA1B/BID/CHEK2/SMAD1/HSPA1A/SQSTM1
## GO:0044389 BCL2/ERBB3/RB1/CDKN1A/CDKN1B/EGFR/JUN/YWHAZ/PARP1/CASP8/CTNNB1/GSK3B/YWHAE/BECN1/TUBA1B/BID/CHEK2/SMAD1/HSPA1A/SQSTM1
## GO:0019903                                     MET/BCL2/CDKN1B/EGFR/PIK3R1/PIK3R2/STAT3/CTNNB1/MAPT/MAPK8/PXN/YWHAE/PTK2/RPS6KB1
## GO:0019902                               MET/BCL2/CDKN1B/EGFR/PIK3R1/PIK3R2/STAT3/CTNNB1/MAPT/MAPK1/MAPK8/PXN/YWHAE/PTK2/RPS6KB1
## GO:0019207                   ERBB3/CCND1/CDKN1A/CDKN1B/EGFR/PIK3R1/PIK3R2/AKT1/CCNE2/AKT1S1/YWHAB/CAV1/CASP3/CCNE1/PIK3CA/RICTOR
## GO:0140297        ESR1/BCL2/NCOA3/RB1/MYC/JUN/ETS1/YWHAZ/STAT5A/STAT3/PARP1/AR/CTNNB1/EIF4E/GSK3B/ARID1A/E2F1/YAP1/SMAD4/TP53BP1
##            Count
## GO:0031625    20
## GO:0044389    20
## GO:0019903    14
## GO:0019902    15
## GO:0019207    16
## GO:0140297    20
##                    ID                           Description GeneRatio   BgRatio
## GO:0051402 GO:0051402              neuron apoptotic process    25/130 292/18888
## GO:0043434 GO:0043434           response to peptide hormone    28/130 438/18888
## GO:0000082 GO:0000082 G1/S transition of mitotic cell cycle    22/130 234/18888
## GO:0062197 GO:0062197  cellular response to chemical stress    24/130 311/18888
## GO:0018105 GO:0018105       peptidyl-serine phosphorylation    23/130 282/18888
## GO:0010038 GO:0010038                 response to metal ion    25/130 360/18888
##                  pvalue     p.adjust       qvalue
## GO:0051402 1.728946e-20 7.781986e-17 3.534330e-17
## GO:0043434 1.805625e-19 4.063558e-16 1.845539e-16
## GO:0000082 5.490606e-19 8.237740e-16 3.741318e-16
## GO:0062197 1.227584e-18 1.381339e-15 6.273599e-16
## GO:0018105 2.004592e-18 1.804533e-15 8.195614e-16
## GO:0010038 2.748137e-18 2.061560e-15 9.362950e-16
##                                                                                                                                                                         geneID
## GO:0051402                       AKT2/G6PD/BCL2/ERBB3/KRAS/RB1/CCND1/BCL2L11/FOXO3/BCL2L1/ATM/PARP1/XIAP/CASP8/CTNNB1/GSK3B/DIABLO/AKT1S1/BID/AXL/MSH2/CASP3/GAPDH/PIK3CA/BRAF
## GO:0043434 AKT2/ERRFI1/RB1/CDKN1B/IRS1/PIK3R1/PIK3R2/RAF1/PTGS2/SHC1/AKT1/STAT5A/STAT3/PARP1/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/PXN/EEF2K/PRKCD/PTK2/CAV1/TFF1/PIK3CA/RPS6KB1/BRAF
## GO:0000082                                       PTEN/BCL2/RB1/CCND1/CDKN1A/CDKN1B/MYC/EGFR/EZH2/AKT1/ATM/CDK1/EIF4E/EIF4G1/ARID1A/CCNE2/BID/CHEK2/E2F1/CCNE1/EIF4EBP1/RPS6KB1
## GO:0062197                                   MET/G6PD/EGFR/JUN/EZH2/PTGS2/FOXO3/AKT1/ATM/PARP1/CDK1/MAPT/PRKAA1/MAPK1/MAPK8/PXN/BECN1/PRKCD/HSPA1A/AXL/CAV1/CASP3/PRDX1/PIK3CA
## GO:0018105                                     AKT2/PTEN/BCL2/EGFR/RAF1/PTGS2/AKT1/ATM/CDK1/EIF4G1/GSK3B/PRKAA1/PRKCA/MAPK1/MAPK8/TFRC/PRKCD/CAV1/RET/RPS6KB1/NEK7/RICTOR/BRAF
## GO:0010038                            G6PD/BCL2/KIT/CDKN1B/EGFR/JUN/PTGS2/AKT1/PARP1/CASP8/CDK1/MAPT/PRKAA1/MAPK1/MAPK8/TFRC/BECN1/NDRG1/EEF2K/ERCC1/CAV1/CASP3/TFF1/NEK7/BRAF
##            Count
## GO:0051402    25
## GO:0043434    28
## GO:0000082    22
## GO:0062197    24
## GO:0018105    23
## GO:0010038    25
##                    ID
## GO:0000781 GO:0000781
## GO:0005925 GO:0005925
## GO:0030055 GO:0030055
## GO:0061695 GO:0061695
## GO:1902911 GO:1902911
## GO:0031968 GO:0031968
##                                                               Description
## GO:0000781                                   chromosome, telomeric region
## GO:0005925                                                 focal adhesion
## GO:0030055                                        cell-substrate junction
## GO:0061695 transferase complex, transferring phosphorus-containing groups
## GO:1902911                                         protein kinase complex
## GO:0031968                                       organelle outer membrane
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0000781    12/130 173/19894 1.510211e-09 5.512271e-07 3.322465e-07
## GO:0005925    16/130 421/19894 1.635708e-08 2.761768e-06 1.664628e-06
## GO:0030055    16/130 431/19894 2.269947e-08 2.761768e-06 1.664628e-06
## GO:0061695    13/130 308/19894 1.179933e-07 1.076689e-05 6.489630e-06
## GO:1902911     9/130 150/19894 6.275122e-07 4.025720e-05 2.426461e-05
## GO:0031968    11/130 248/19894 7.132908e-07 4.025720e-05 2.426461e-05
##                                                                                                geneID
## GO:0000781                       EZH2/ATM/PARP1/CDK1/CHEK1/RAD51/ERCC1/CHEK2/MSH2/XRCC1/TP53BP1/RAD50
## GO:0005925 KRAS/MYH9/EGFR/PIK3R2/SHC1/YWHAZ/CTNNB1/ITGA2/MAPK1/PXN/YWHAE/YWHAB/HSPA1A/PTK2/CAV1/ANXA1
## GO:0030055 KRAS/MYH9/EGFR/PIK3R2/SHC1/YWHAZ/CTNNB1/ITGA2/MAPK1/PXN/YWHAE/YWHAB/HSPA1A/PTK2/CAV1/ANXA1
## GO:0061695             RB1/CCND1/CDKN1A/IRS1/PIK3R1/PIK3R2/CDK1/IGF1R/PRKAA1/BECN1/CCNE2/CCNE1/PIK3CA
## GO:1902911                                        RB1/CCND1/CDKN1A/IRS1/CDK1/IGF1R/PRKAA1/CCNE2/CCNE1
## GO:0031968                          BCL2/KRAS/BCL2L11/RAF1/PTGS2/FOXO3/BCL2L1/CASP8/BECN1/BID/RPS6KB1
##            Count
## GO:0000781    12
## GO:0005925    16
## GO:0030055    16
## GO:0061695    13
## GO:1902911     9
## GO:0031968    11
##                    ID                              Description GeneRatio
## GO:0019902 GO:0019902                      phosphatase binding    16/125
## GO:0140297 GO:0140297 DNA-binding transcription factor binding    22/125
## GO:0019207 GO:0019207                kinase regulator activity    17/125
## GO:0004674 GO:0004674 protein serine/threonine kinase activity    20/125
## GO:0019903 GO:0019903              protein phosphatase binding    13/125
## GO:0031625 GO:0031625         ubiquitin protein ligase binding    17/125
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0019902 189/18522 1.719680e-13 9.183092e-11 4.670289e-11
## GO:0140297 478/18522 1.026637e-12 2.741120e-10 1.394064e-10
## GO:0019207 270/18522 3.581531e-12 6.375126e-10 3.242228e-10
## GO:0004674 427/18522 8.957830e-12 1.195870e-09 6.081895e-10
## GO:0019903 142/18522 1.332590e-11 1.423206e-09 7.238070e-10
## GO:0031625 305/18522 2.485038e-11 2.211684e-09 1.124807e-09
##                                                                                                                                geneID
## GO:0019902                               MET/BCL2/CDKN1B/EGFR/PIK3R1/PIK3R2/STAT3/MAPT/MAPK1/MAPK8/PXN/YWHAE/PTK2/SMAD3/MAPK3/RPS6KB1
## GO:0140297 ESR1/BCL2/NCOA3/RB1/MYC/JUN/ETS1/YWHAZ/STAT5A/STAT3/PARP1/AR/EIF4E/GSK3B/ARID1A/E2F1/CDKN2A/YAP1/SMAD3/SMAD4/MAPK3/TP53BP1
## GO:0019207                 ERBB3/CCND1/CDKN1A/CDKN1B/EGFR/PIK3R1/PIK3R2/AKT1/CCNE2/AKT1S1/YWHAB/CDKN2A/CAV1/CASP3/CCNE1/PIK3CA/RICTOR
## GO:0004674       AKT2/EGFR/RAF1/AKT1/CHEK1/GSK3B/PRKAA1/PRKCA/MAPK1/MAPK8/EEF2K/CHEK2/PRKCD/MAPK9/CDK1/PIK3CA/MAPK3/RPS6KB1/NEK7/BRAF
## GO:0019903                                                 MET/BCL2/CDKN1B/EGFR/PIK3R1/PIK3R2/STAT3/MAPT/MAPK8/PXN/YWHAE/PTK2/RPS6KB1
## GO:0031625                         BCL2/ERBB3/RB1/CDKN1A/CDKN1B/EGFR/JUN/YWHAZ/PARP1/GSK3B/YWHAE/TUBA1B/BID/CHEK2/HSPA1A/SMAD3/SQSTM1
##            Count
## GO:0019902    16
## GO:0140297    22
## GO:0019207    17
## GO:0004674    20
## GO:0019903    13
## GO:0031625    17
##                    ID                                   Description GeneRatio
## GO:0043434 GO:0043434                   response to peptide hormone    30/125
## GO:0010038 GO:0010038                         response to metal ion    26/125
## GO:0000082 GO:0000082         G1/S transition of mitotic cell cycle    22/125
## GO:0071375 GO:0071375 cellular response to peptide hormone stimulus    24/125
## GO:0018105 GO:0018105               peptidyl-serine phosphorylation    23/125
## GO:0044772 GO:0044772           mitotic cell cycle phase transition    27/125
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0043434 438/18888 3.091366e-22 1.284153e-18 6.130667e-19
## GO:0010038 360/18888 7.039858e-20 1.462178e-16 6.980575e-17
## GO:0000082 234/18888 2.257241e-19 3.125527e-16 1.492155e-16
## GO:0071375 311/18888 4.678801e-19 4.858935e-16 2.319700e-16
## GO:0018105 282/18888 7.956045e-19 6.609882e-16 3.155619e-16
## GO:0044772 451/18888 1.580125e-18 1.031375e-15 4.923882e-16
##                                                                                                                                                                                     geneID
## GO:0043434 ERRFI1/AKT2/RB1/CDKN1B/IRS1/PIK3R1/PIK3R2/RAF1/PTGS2/SHC1/AKT1/STAT5A/STAT3/PARP1/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/PXN/EEF2K/PRKCD/PTK2/CAV1/TFF1/SMAD3/PIK3CA/MAPK3/RPS6KB1/BRAF
## GO:0010038                                  G6PD/BCL2/KIT/CDKN1B/EGFR/JUN/PTGS2/AKT1/PARP1/MAPT/PRKAA1/MAPK1/MAPK8/NDRG1/EEF2K/ERCC1/CASP9/CAV1/CASP3/MAPK9/TFF1/CDK1/MAPK3/TFRC/NEK7/BRAF
## GO:0000082                                                PTEN/BCL2/RB1/CCND1/CDKN1A/CDKN1B/MYC/EGFR/EZH2/AKT1/EIF4E/EIF4G1/ARID1A/CCNE2/BID/CHEK2/E2F1/CDKN2A/CCNE1/CDK1/EIF4EBP1/RPS6KB1
## GO:0071375                                     AKT2/RB1/IRS1/PIK3R1/PIK3R2/RAF1/SHC1/AKT1/STAT5A/STAT3/PARP1/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/PXN/EEF2K/PRKCD/PTK2/CAV1/PIK3CA/MAPK3/RPS6KB1
## GO:0018105                                               AKT2/PTEN/BCL2/EGFR/RAF1/PTGS2/AKT1/EIF4G1/GSK3B/PRKAA1/PRKCA/MAPK1/MAPK8/PRKCD/CAV1/MAPK9/CDK1/RET/RPS6KB1/TFRC/NEK7/RICTOR/BRAF
## GO:0044772                  PTEN/BCL2/RB1/CCND1/CDKN1A/CDKN1B/MYC/EGFR/EZH2/AKT1/CHEK1/EIF4E/EIF4G1/ARID1A/CCNE2/BID/CHEK2/E2F1/CDKN2A/CCNE1/CDK1/EIF4EBP1/FOXM1/RPS6KB1/RAB11A/ANLN/RAD50
##            Count
## GO:0043434    30
## GO:0010038    26
## GO:0000082    22
## GO:0071375    24
## GO:0018105    23
## GO:0044772    27
##                    ID
## GO:0005925 GO:0005925
## GO:0000781 GO:0000781
## GO:0030055 GO:0030055
## GO:1902911 GO:1902911
## GO:0061695 GO:0061695
## GO:0000307 GO:0000307
##                                                               Description
## GO:0005925                                                 focal adhesion
## GO:0000781                                   chromosome, telomeric region
## GO:0030055                                        cell-substrate junction
## GO:1902911                                         protein kinase complex
## GO:0061695 transferase complex, transferring phosphorus-containing groups
## GO:0000307             cyclin-dependent protein kinase holoenzyme complex
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0005925    16/125 421/19894 9.238717e-09 1.435092e-06 8.838270e-07
## GO:0000781    11/125 173/19894 1.230305e-08 1.435092e-06 8.838270e-07
## GO:0030055    16/125 431/19894 1.285157e-08 1.435092e-06 8.838270e-07
## GO:1902911     9/125 150/19894 4.499346e-07 3.768202e-05 2.320715e-05
## GO:0061695    12/125 308/19894 5.669862e-07 3.798808e-05 2.339564e-05
## GO:0000307     6/125  56/19894 1.369442e-06 7.646050e-05 4.708958e-05
##                                                                                               geneID
## GO:0005925 KRAS/MYH9/EGFR/PIK3R2/SHC1/YWHAZ/ITGA2/MAPK1/PXN/YWHAE/YWHAB/HSPA1A/PTK2/CAV1/ANXA1/MAPK3
## GO:0000781                          EZH2/PARP1/CHEK1/RAD51/ERCC1/CHEK2/MSH2/CDK1/XRCC1/TP53BP1/RAD50
## GO:0030055 KRAS/MYH9/EGFR/PIK3R2/SHC1/YWHAZ/ITGA2/MAPK1/PXN/YWHAE/YWHAB/HSPA1A/PTK2/CAV1/ANXA1/MAPK3
## GO:1902911                                       RB1/CCND1/CDKN1A/IRS1/IGF1R/PRKAA1/CCNE2/CCNE1/CDK1
## GO:0061695                  RB1/CCND1/CDKN1A/IRS1/PIK3R1/PIK3R2/IGF1R/PRKAA1/CCNE2/CCNE1/CDK1/PIK3CA
## GO:0000307                                                         RB1/CCND1/CDKN1A/CCNE2/CCNE1/CDK1
##            Count
## GO:0005925    16
## GO:0000781    11
## GO:0030055    16
## GO:1902911     9
## GO:0061695    12
## GO:0000307     6
##                    ID                              Description GeneRatio
## GO:0031625 GO:0031625         ubiquitin protein ligase binding    20/130
## GO:0044389 GO:0044389    ubiquitin-like protein ligase binding    20/130
## GO:0019903 GO:0019903              protein phosphatase binding    14/130
## GO:0019902 GO:0019902                      phosphatase binding    15/130
## GO:0019207 GO:0019207                kinase regulator activity    16/130
## GO:0140297 GO:0140297 DNA-binding transcription factor binding    20/130
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0031625 305/18522 3.777491e-14 2.047400e-11 1.041792e-11
## GO:0044389 324/18522 1.178373e-13 3.193392e-11 1.624915e-11
## GO:0019903 142/18522 1.294257e-12 2.338291e-10 1.189808e-10
## GO:0019902 189/18522 4.697829e-12 6.365558e-10 3.239029e-10
## GO:0019207 270/18522 7.338435e-11 7.954864e-09 4.047726e-09
## GO:0140297 478/18522 1.408162e-10 1.168562e-08 5.946070e-09
##                                                                                                                           geneID
## GO:0031625 BCL2/ERBB3/RB1/CDKN1A/CDKN1B/EGFR/JUN/YWHAZ/PARP1/CASP8/CTNNB1/GSK3B/YWHAE/BECN1/TUBA1B/BID/CHEK2/SMAD1/HSPA1A/SQSTM1
## GO:0044389 BCL2/ERBB3/RB1/CDKN1A/CDKN1B/EGFR/JUN/YWHAZ/PARP1/CASP8/CTNNB1/GSK3B/YWHAE/BECN1/TUBA1B/BID/CHEK2/SMAD1/HSPA1A/SQSTM1
## GO:0019903                                     MET/BCL2/CDKN1B/EGFR/PIK3R1/PIK3R2/STAT3/CTNNB1/MAPT/MAPK8/PXN/YWHAE/PTK2/RPS6KB1
## GO:0019902                               MET/BCL2/CDKN1B/EGFR/PIK3R1/PIK3R2/STAT3/CTNNB1/MAPT/MAPK1/MAPK8/PXN/YWHAE/PTK2/RPS6KB1
## GO:0019207                   ERBB3/CCND1/CDKN1A/CDKN1B/EGFR/PIK3R1/PIK3R2/AKT1/CCNE2/AKT1S1/YWHAB/CAV1/CASP3/CCNE1/PIK3CA/RICTOR
## GO:0140297        ESR1/BCL2/NCOA3/RB1/MYC/JUN/ETS1/YWHAZ/STAT5A/STAT3/PARP1/AR/CTNNB1/EIF4E/GSK3B/ARID1A/E2F1/YAP1/SMAD4/TP53BP1
##            Count
## GO:0031625    20
## GO:0044389    20
## GO:0019903    14
## GO:0019902    15
## GO:0019207    16
## GO:0140297    20
##                    ID                           Description GeneRatio   BgRatio
## GO:0051402 GO:0051402              neuron apoptotic process    25/130 292/18888
## GO:0043434 GO:0043434           response to peptide hormone    28/130 438/18888
## GO:0000082 GO:0000082 G1/S transition of mitotic cell cycle    22/130 234/18888
## GO:0062197 GO:0062197  cellular response to chemical stress    24/130 311/18888
## GO:0018105 GO:0018105       peptidyl-serine phosphorylation    23/130 282/18888
## GO:0010038 GO:0010038                 response to metal ion    25/130 360/18888
##                  pvalue     p.adjust       qvalue
## GO:0051402 1.728946e-20 7.781986e-17 3.534330e-17
## GO:0043434 1.805625e-19 4.063558e-16 1.845539e-16
## GO:0000082 5.490606e-19 8.237740e-16 3.741318e-16
## GO:0062197 1.227584e-18 1.381339e-15 6.273599e-16
## GO:0018105 2.004592e-18 1.804533e-15 8.195614e-16
## GO:0010038 2.748137e-18 2.061560e-15 9.362950e-16
##                                                                                                                                                                         geneID
## GO:0051402                       AKT2/G6PD/BCL2/ERBB3/KRAS/RB1/CCND1/BCL2L11/FOXO3/BCL2L1/ATM/PARP1/XIAP/CASP8/CTNNB1/GSK3B/DIABLO/AKT1S1/BID/AXL/MSH2/CASP3/GAPDH/PIK3CA/BRAF
## GO:0043434 AKT2/ERRFI1/RB1/CDKN1B/IRS1/PIK3R1/PIK3R2/RAF1/PTGS2/SHC1/AKT1/STAT5A/STAT3/PARP1/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/PXN/EEF2K/PRKCD/PTK2/CAV1/TFF1/PIK3CA/RPS6KB1/BRAF
## GO:0000082                                       PTEN/BCL2/RB1/CCND1/CDKN1A/CDKN1B/MYC/EGFR/EZH2/AKT1/ATM/CDK1/EIF4E/EIF4G1/ARID1A/CCNE2/BID/CHEK2/E2F1/CCNE1/EIF4EBP1/RPS6KB1
## GO:0062197                                   MET/G6PD/EGFR/JUN/EZH2/PTGS2/FOXO3/AKT1/ATM/PARP1/CDK1/MAPT/PRKAA1/MAPK1/MAPK8/PXN/BECN1/PRKCD/HSPA1A/AXL/CAV1/CASP3/PRDX1/PIK3CA
## GO:0018105                                     AKT2/PTEN/BCL2/EGFR/RAF1/PTGS2/AKT1/ATM/CDK1/EIF4G1/GSK3B/PRKAA1/PRKCA/MAPK1/MAPK8/TFRC/PRKCD/CAV1/RET/RPS6KB1/NEK7/RICTOR/BRAF
## GO:0010038                            G6PD/BCL2/KIT/CDKN1B/EGFR/JUN/PTGS2/AKT1/PARP1/CASP8/CDK1/MAPT/PRKAA1/MAPK1/MAPK8/TFRC/BECN1/NDRG1/EEF2K/ERCC1/CAV1/CASP3/TFF1/NEK7/BRAF
##            Count
## GO:0051402    25
## GO:0043434    28
## GO:0000082    22
## GO:0062197    24
## GO:0018105    23
## GO:0010038    25
##                    ID
## GO:0000781 GO:0000781
## GO:0005925 GO:0005925
## GO:0030055 GO:0030055
## GO:0061695 GO:0061695
## GO:1902911 GO:1902911
## GO:0031968 GO:0031968
##                                                               Description
## GO:0000781                                   chromosome, telomeric region
## GO:0005925                                                 focal adhesion
## GO:0030055                                        cell-substrate junction
## GO:0061695 transferase complex, transferring phosphorus-containing groups
## GO:1902911                                         protein kinase complex
## GO:0031968                                       organelle outer membrane
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0000781    12/130 173/19894 1.510211e-09 5.512271e-07 3.322465e-07
## GO:0005925    16/130 421/19894 1.635708e-08 2.761768e-06 1.664628e-06
## GO:0030055    16/130 431/19894 2.269947e-08 2.761768e-06 1.664628e-06
## GO:0061695    13/130 308/19894 1.179933e-07 1.076689e-05 6.489630e-06
## GO:1902911     9/130 150/19894 6.275122e-07 4.025720e-05 2.426461e-05
## GO:0031968    11/130 248/19894 7.132908e-07 4.025720e-05 2.426461e-05
##                                                                                                geneID
## GO:0000781                       EZH2/ATM/PARP1/CDK1/CHEK1/RAD51/ERCC1/CHEK2/MSH2/XRCC1/TP53BP1/RAD50
## GO:0005925 KRAS/MYH9/EGFR/PIK3R2/SHC1/YWHAZ/CTNNB1/ITGA2/MAPK1/PXN/YWHAE/YWHAB/HSPA1A/PTK2/CAV1/ANXA1
## GO:0030055 KRAS/MYH9/EGFR/PIK3R2/SHC1/YWHAZ/CTNNB1/ITGA2/MAPK1/PXN/YWHAE/YWHAB/HSPA1A/PTK2/CAV1/ANXA1
## GO:0061695             RB1/CCND1/CDKN1A/IRS1/PIK3R1/PIK3R2/CDK1/IGF1R/PRKAA1/BECN1/CCNE2/CCNE1/PIK3CA
## GO:1902911                                        RB1/CCND1/CDKN1A/IRS1/CDK1/IGF1R/PRKAA1/CCNE2/CCNE1
## GO:0031968                          BCL2/KRAS/BCL2L11/RAF1/PTGS2/FOXO3/BCL2L1/CASP8/BECN1/BID/RPS6KB1
##            Count
## GO:0000781    12
## GO:0005925    16
## GO:0030055    16
## GO:0061695    13
## GO:1902911     9
## GO:0031968    11
##                    ID                              Description GeneRatio
## GO:0019902 GO:0019902                      phosphatase binding    18/138
## GO:0031625 GO:0031625         ubiquitin protein ligase binding    21/138
## GO:0044389 GO:0044389    ubiquitin-like protein ligase binding    21/138
## GO:0140297 GO:0140297 DNA-binding transcription factor binding    24/138
## GO:0019903 GO:0019903              protein phosphatase binding    15/138
## GO:0004674 GO:0004674 protein serine/threonine kinase activity    22/138
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0019902 189/18522 3.530337e-15 1.994640e-12 1.051669e-12
## GO:0031625 305/18522 1.070939e-14 3.025403e-12 1.595136e-12
## GO:0044389 324/18522 3.537739e-14 6.662742e-12 3.512913e-12
## GO:0140297 478/18522 1.241363e-13 1.753425e-11 9.244888e-12
## GO:0019903 142/18522 1.708227e-13 1.930296e-11 1.017744e-11
## GO:0004674 427/18522 8.683081e-13 8.176568e-11 4.311073e-11
##                                                                                                                                            geneID
## GO:0019902                               MET/BCL2/CDKN1B/EGFR/PIK3R1/PIK3R2/STAT3/CTNNB1/MAPT/MAPK1/MAPK8/PXN/YWHAE/PTK2/TP53/SMAD3/MAPK3/RPS6KB1
## GO:0031625             BCL2/ERBB3/RB1/CDKN1A/CDKN1B/EGFR/JUN/YWHAZ/PARP1/CASP8/CTNNB1/GSK3B/YWHAE/BECN1/TUBA1B/BID/CHEK2/HSPA1A/TP53/SMAD3/SQSTM1
## GO:0044389             BCL2/ERBB3/RB1/CDKN1A/CDKN1B/EGFR/JUN/YWHAZ/PARP1/CASP8/CTNNB1/GSK3B/YWHAE/BECN1/TUBA1B/BID/CHEK2/HSPA1A/TP53/SMAD3/SQSTM1
## GO:0140297 ESR1/BCL2/NCOA3/E2F1/RB1/MYC/JUN/ETS1/YWHAZ/STAT5A/STAT3/PARP1/AR/CTNNB1/EIF4E/GSK3B/ARID1A/CDKN2A/TP53/YAP1/SMAD3/SMAD4/MAPK3/TP53BP1
## GO:0019903                                                 MET/BCL2/CDKN1B/EGFR/PIK3R1/PIK3R2/STAT3/CTNNB1/MAPT/MAPK8/PXN/YWHAE/PTK2/TP53/RPS6KB1
## GO:0004674        AKT2/EGFR/RAF1/AKT1/ATM/CDK1/CHEK1/GSK3B/PRKAA1/PRKCA/MAPK1/MAPK8/EEF2K/ACVRL1/CHEK2/PRKCD/MAPK9/PIK3CA/MAPK3/RPS6KB1/NEK7/BRAF
##            Count
## GO:0019902    18
## GO:0031625    21
## GO:0044389    21
## GO:0140297    24
## GO:0019903    15
## GO:0004674    22
##                    ID                           Description GeneRatio   BgRatio
## GO:0051402 GO:0051402              neuron apoptotic process    27/138 292/18888
## GO:0043434 GO:0043434           response to peptide hormone    31/138 438/18888
## GO:0062197 GO:0062197  cellular response to chemical stress    27/138 311/18888
## GO:0010038 GO:0010038                 response to metal ion    28/138 360/18888
## GO:0000082 GO:0000082 G1/S transition of mitotic cell cycle    24/138 234/18888
## GO:0006979 GO:0006979          response to oxidative stress    28/138 398/18888
##                  pvalue     p.adjust       qvalue
## GO:0051402 2.990530e-22 1.204328e-18 5.415104e-19
## GO:0043434 5.191068e-22 1.204328e-18 5.415104e-19
## GO:0062197 1.589685e-21 2.458712e-18 1.105528e-18
## GO:0010038 5.230037e-21 6.066843e-18 2.727877e-18
## GO:0000082 6.570800e-21 6.097702e-18 2.741753e-18
## GO:0006979 7.760224e-20 6.001240e-17 2.698380e-17
##                                                                                                                                                                                          geneID
## GO:0051402                             AKT2/G6PD/BCL2/ERBB3/KRAS/RB1/CCND1/BCL2L11/FOXO3/BCL2L1/ATM/PARP1/XIAP/CASP8/CTNNB1/GSK3B/AKT1S1/BID/CASP9/AXL/MSH2/CASP3/TP53/GAPDH/PIK3CA/DIABLO/BRAF
## GO:0043434 AKT2/ERRFI1/RB1/CDKN1B/IRS1/PIK3R1/PIK3R2/RAF1/PTGS2/SHC1/AKT1/STAT5A/STAT3/PARP1/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/PXN/EEF2K/PRKCD/PTK2/CAV1/TFF1/XBP1/SMAD3/PIK3CA/MAPK3/RPS6KB1/BRAF
## GO:0062197                                   MET/G6PD/EGFR/JUN/EZH2/PTGS2/FOXO3/AKT1/ATM/PARP1/CDK1/MAPT/PRKAA1/MAPK1/MAPK8/PXN/BECN1/PRKCD/HSPA1A/AXL/CAV1/CASP3/MAPK9/TP53/PRDX1/PIK3CA/MAPK3
## GO:0010038                           G6PD/BCL2/KIT/CDKN1B/EGFR/JUN/PTGS2/AKT1/PARP1/CASP8/CDK1/MAPT/PRKAA1/MAPK1/MAPK8/BECN1/NDRG1/EEF2K/ERCC1/CASP9/CAV1/CASP3/MAPK9/TFF1/MAPK3/TFRC/NEK7/BRAF
## GO:0000082                                            PTEN/BCL2/E2F1/RB1/CCND1/CDKN1A/CDKN1B/MYC/EGFR/EZH2/AKT1/ATM/CDK1/EIF4E/EIF4G1/ARID1A/CCNE2/BID/CHEK2/CDKN2A/CCNE1/TP53/EIF4EBP1/RPS6KB1
## GO:0006979                              MET/G6PD/BCL2/EGFR/JUN/EZH2/PTGS2/FOXO3/AKT1/ATM/PARP1/CDK1/MAPT/PRKAA1/MAPK1/MAPK8/PXN/BECN1/ERCC1/PRKCD/HSPA1A/AXL/CASP3/MAPK9/TP53/PRDX1/MAPK3/XRCC1
##            Count
## GO:0051402    27
## GO:0043434    31
## GO:0062197    27
## GO:0010038    28
## GO:0000082    24
## GO:0006979    28
##                    ID
## GO:0005925 GO:0005925
## GO:0030055 GO:0030055
## GO:0000781 GO:0000781
## GO:0005901 GO:0005901
## GO:0061695 GO:0061695
## GO:1902911 GO:1902911
##                                                               Description
## GO:0005925                                                 focal adhesion
## GO:0030055                                        cell-substrate junction
## GO:0000781                                   chromosome, telomeric region
## GO:0005901                                                        caveola
## GO:0061695 transferase complex, transferring phosphorus-containing groups
## GO:1902911                                         protein kinase complex
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0005925    18/138 421/19894 7.970149e-10 2.170356e-07 1.303737e-07
## GO:0030055    18/138 431/19894 1.157523e-09 2.170356e-07 1.303737e-07
## GO:0000781    12/138 173/19894 3.004464e-09 3.755580e-07 2.255983e-07
## GO:0005901     8/138  82/19894 1.011520e-07 9.482999e-06 5.696454e-06
## GO:0061695    13/138 308/19894 2.383031e-07 1.787273e-05 1.073618e-05
## GO:1902911     9/138 150/19894 1.037884e-06 5.830001e-05 3.502092e-05
##                                                                                                           geneID
## GO:0005925 KRAS/MYH9/EGFR/PIK3R2/SHC1/YWHAZ/CTNNB1/ITGA2/MAPK1/PXN/YWHAE/YWHAB/HSPA1A/PTK2/CAV1/ANXA1/MAPK3/VASP
## GO:0030055 KRAS/MYH9/EGFR/PIK3R2/SHC1/YWHAZ/CTNNB1/ITGA2/MAPK1/PXN/YWHAE/YWHAB/HSPA1A/PTK2/CAV1/ANXA1/MAPK3/VASP
## GO:0000781                                  EZH2/ATM/PARP1/CDK1/CHEK1/RAD51/ERCC1/CHEK2/MSH2/XRCC1/TP53BP1/RAD50
## GO:0005901                                                        IRS1/PTGS2/CTNNB1/IGF1R/MAPK1/CAV1/MAPK3/PTCH1
## GO:0061695                        RB1/CCND1/CDKN1A/IRS1/PIK3R1/PIK3R2/CDK1/IGF1R/PRKAA1/BECN1/CCNE2/CCNE1/PIK3CA
## GO:1902911                                                   RB1/CCND1/CDKN1A/IRS1/CDK1/IGF1R/PRKAA1/CCNE2/CCNE1
##            Count
## GO:0005925    18
## GO:0030055    18
## GO:0000781    12
## GO:0005901     8
## GO:0061695    13
## GO:1902911     9
##                    ID                              Description GeneRatio
## GO:0031625 GO:0031625         ubiquitin protein ligase binding    20/142
## GO:0019903 GO:0019903              protein phosphatase binding    15/142
## GO:0044389 GO:0044389    ubiquitin-like protein ligase binding    20/142
## GO:0019902 GO:0019902                      phosphatase binding    16/142
## GO:0140297 GO:0140297 DNA-binding transcription factor binding    22/142
## GO:0004674 GO:0004674 protein serine/threonine kinase activity    20/142
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0031625 305/18522 2.120082e-13 7.334607e-11 3.853438e-11
## GO:0019903 142/18522 2.614833e-13 7.334607e-11 3.853438e-11
## GO:0044389 324/18522 6.535422e-13 1.222124e-10 6.420765e-11
## GO:0019902 189/18522 1.289084e-12 1.807941e-10 9.498517e-11
## GO:0140297 478/18522 1.450330e-11 1.627270e-09 8.549312e-10
## GO:0004674 427/18522 9.800004e-11 9.163003e-09 4.814037e-09
##                                                                                                                              geneID
## GO:0031625    BCL2/ERBB3/RB1/CDKN1A/CDKN1B/EGFR/JUN/YWHAZ/PARP1/CASP8/CTNNB1/GSK3B/YWHAE/BECN1/TUBA1B/BID/CHEK2/SMAD1/HSPA1A/SQSTM1
## GO:0019903                                   MET/BCL2/CDKN1B/EGFR/PIK3R1/PIK3R2/STAT3/CTNNB1/MAPT/MAPK8/PXN/YWHAE/PTK2/RPS6KB1/CDH2
## GO:0044389    BCL2/ERBB3/RB1/CDKN1A/CDKN1B/EGFR/JUN/YWHAZ/PARP1/CASP8/CTNNB1/GSK3B/YWHAE/BECN1/TUBA1B/BID/CHEK2/SMAD1/HSPA1A/SQSTM1
## GO:0019902                             MET/BCL2/CDKN1B/EGFR/PIK3R1/PIK3R2/STAT3/CTNNB1/MAPT/MAPK1/MAPK8/PXN/YWHAE/PTK2/RPS6KB1/CDH2
## GO:0140297 ESR1/BCL2/NCOA3/RB1/MYC/JUN/ETS1/YWHAZ/STAT5A/STAT3/PARP1/AR/CTNNB1/EIF4E/GSK3B/ARID1A/E2F1/YAP1/SMAD4/TP53BP1/GATA3/VHL
## GO:0004674      AKT2/EGFR/RAF1/AKT1/ATM/CDK1/CHEK1/GSK3B/PRKAA1/PRKCA/MAPK1/MAPK8/EEF2K/CHEK2/PRKCD/PIK3CA/RPS6KB1/NEK7/BRAF/ACVRL1
##            Count
## GO:0031625    20
## GO:0019903    15
## GO:0044389    20
## GO:0019902    16
## GO:0140297    22
## GO:0004674    20
##                    ID                                   Description GeneRatio
## GO:0051402 GO:0051402                      neuron apoptotic process    27/142
## GO:0043434 GO:0043434                   response to peptide hormone    30/142
## GO:0097191 GO:0097191         extrinsic apoptotic signaling pathway    22/142
## GO:0000082 GO:0000082         G1/S transition of mitotic cell cycle    22/142
## GO:0062197 GO:0062197          cellular response to chemical stress    24/142
## GO:0071375 GO:0071375 cellular response to peptide hormone stimulus    24/142
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0051402 292/18888 6.648362e-22 3.096142e-18 1.433247e-18
## GO:0043434 438/18888 1.614224e-20 3.758722e-17 1.739964e-17
## GO:0097191 230/18888 2.739947e-18 4.253312e-15 1.968917e-15
## GO:0000082 234/18888 3.978710e-18 4.632213e-15 2.144315e-15
## GO:0062197 311/18888 1.048821e-17 8.140599e-15 3.768395e-15
## GO:0071375 311/18888 1.048821e-17 8.140599e-15 3.768395e-15
##                                                                                                                                                                                     geneID
## GO:0051402                      AKT2/G6PD/BCL2/ERBB3/KRAS/RB1/CCND1/BCL2L11/FOXO3/BCL2L1/ATM/PARP1/XIAP/CASP8/CTNNB1/GSK3B/DIABLO/AKT1S1/BID/AXL/MSH2/CASP3/GAPDH/PIK3CA/BRAF/COL6A1/GATA3
## GO:0043434 AKT2/ERRFI1/RB1/CDKN1B/IRS1/PIK3R1/PIK3R2/RAF1/PTGS2/SHC1/AKT1/STAT5A/STAT3/PARP1/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/PXN/EEF2K/PRKCD/PTK2/CAV1/TFF1/PIK3CA/RPS6KB1/BRAF/COL6A1/TSC1
## GO:0097191                                             BCL2/ERBB3/PIK3R1/BCL2L11/RAF1/FOXO3/AKT1/BCL2L1/AR/CASP8/GSK3B/PEA15/DIABLO/BID/HSPA1A/CAV1/YAP1/SMAD4/SERPINE1/RET/RPS6KB1/CTNNA1
## GO:0000082                                                   PTEN/BCL2/RB1/CCND1/CDKN1A/CDKN1B/MYC/EGFR/EZH2/AKT1/ATM/CDK1/EIF4E/EIF4G1/ARID1A/CCNE2/BID/CHEK2/E2F1/CCNE1/EIF4EBP1/RPS6KB1
## GO:0062197                                               MET/G6PD/EGFR/JUN/EZH2/PTGS2/FOXO3/AKT1/ATM/PARP1/CDK1/MAPT/PRKAA1/MAPK1/MAPK8/PXN/BECN1/PRKCD/HSPA1A/AXL/CAV1/CASP3/PRDX1/PIK3CA
## GO:0071375                                    AKT2/RB1/IRS1/PIK3R1/PIK3R2/RAF1/SHC1/AKT1/STAT5A/STAT3/PARP1/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/PXN/EEF2K/PRKCD/PTK2/CAV1/PIK3CA/RPS6KB1/COL6A1
##            Count
## GO:0051402    27
## GO:0043434    30
## GO:0097191    22
## GO:0000082    22
## GO:0062197    24
## GO:0071375    24
##                    ID
## GO:0005925 GO:0005925
## GO:0030055 GO:0030055
## GO:0000781 GO:0000781
## GO:0061695 GO:0061695
## GO:1902911 GO:1902911
## GO:0044853 GO:0044853
##                                                               Description
## GO:0005925                                                 focal adhesion
## GO:0030055                                        cell-substrate junction
## GO:0000781                                   chromosome, telomeric region
## GO:0061695 transferase complex, transferring phosphorus-containing groups
## GO:1902911                                         protein kinase complex
## GO:0044853                                           plasma membrane raft
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0005925    19/142 421/19894 1.719171e-10 4.879102e-08 2.783065e-08
## GO:0030055    19/142 431/19894 2.554504e-10 4.879102e-08 2.783065e-08
## GO:0000781    12/142 173/19894 4.167148e-09 5.306169e-07 3.026666e-07
## GO:0061695    13/142 308/19894 3.325123e-07 3.175492e-05 1.811317e-05
## GO:1902911     9/142 150/19894 1.318477e-06 8.401001e-05 4.791974e-05
## GO:0044853     8/142 113/19894 1.504893e-06 8.401001e-05 4.791974e-05
##                                                                                                                 geneID
## GO:0005925 KRAS/MYH9/EGFR/PIK3R2/SHC1/YWHAZ/CTNNB1/ITGA2/MAPK1/PXN/YWHAE/YWHAB/HSPA1A/PTK2/CAV1/ANXA1/TGM2/CDH2/CTNNA1
## GO:0030055 KRAS/MYH9/EGFR/PIK3R2/SHC1/YWHAZ/CTNNB1/ITGA2/MAPK1/PXN/YWHAE/YWHAB/HSPA1A/PTK2/CAV1/ANXA1/TGM2/CDH2/CTNNA1
## GO:0000781                                        EZH2/ATM/PARP1/CDK1/CHEK1/RAD51/ERCC1/CHEK2/MSH2/XRCC1/TP53BP1/RAD50
## GO:0061695                              RB1/CCND1/CDKN1A/IRS1/PIK3R1/PIK3R2/CDK1/IGF1R/PRKAA1/BECN1/CCNE2/CCNE1/PIK3CA
## GO:1902911                                                         RB1/CCND1/CDKN1A/IRS1/CDK1/IGF1R/PRKAA1/CCNE2/CCNE1
## GO:0044853                                                              IRS1/PTGS2/CTNNB1/IGF1R/MAPK1/CAV1/CDH2/CTNNA1
##            Count
## GO:0005925    19
## GO:0030055    19
## GO:0000781    12
## GO:0061695    13
## GO:1902911     9
## GO:0044853     8
##                    ID                              Description GeneRatio
## GO:0019902 GO:0019902                      phosphatase binding    18/137
## GO:0140297 GO:0140297 DNA-binding transcription factor binding    25/137
## GO:0019903 GO:0019903              protein phosphatase binding    15/137
## GO:0004674 GO:0004674 protein serine/threonine kinase activity    21/137
## GO:0031625 GO:0031625         ubiquitin protein ligase binding    18/137
## GO:0019207 GO:0019207                kinase regulator activity    17/137
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0019902 189/18522 3.097054e-15 1.709574e-12 9.160761e-13
## GO:0140297 478/18522 1.194408e-14 3.296565e-12 1.766466e-12
## GO:0019903 142/18522 1.532438e-13 2.819686e-11 1.510930e-11
## GO:0004674 427/18522 6.306427e-12 8.702869e-10 4.663437e-10
## GO:0031625 305/18522 1.155129e-11 1.275263e-09 6.833501e-10
## GO:0019207 270/18522 1.615466e-11 1.486229e-09 7.963965e-10
##                                                                                                                                                 geneID
## GO:0019902                                    MET/BCL2/CDKN1B/EGFR/PIK3R1/PIK3R2/STAT3/MAPT/MAPK1/MAPK8/PXN/YWHAE/PTK2/CTNNB1/SMAD3/MAPK3/RPS6KB1/CDH2
## GO:0140297 ESR1/BCL2/NCOA3/RB1/MYC/JUN/ETS1/YWHAZ/STAT5A/STAT3/PARP1/AR/EIF4E/GSK3B/ARID1A/E2F1/CDKN2A/YAP1/CTNNB1/SMAD3/SMAD4/MAPK3/TP53BP1/GATA3/VHL
## GO:0019903                                                      MET/BCL2/CDKN1B/EGFR/PIK3R1/PIK3R2/STAT3/MAPT/MAPK8/PXN/YWHAE/PTK2/CTNNB1/RPS6KB1/CDH2
## GO:0004674                    AKT2/EGFR/RAF1/AKT1/CHEK1/GSK3B/PRKAA1/PRKCA/MAPK1/MAPK8/EEF2K/CHEK2/PRKCD/MAPK9/CDK1/PIK3CA/MAPK3/RPS6KB1/NEK7/BRAF/ATM
## GO:0031625                                   BCL2/ERBB3/RB1/CDKN1A/CDKN1B/EGFR/JUN/YWHAZ/PARP1/GSK3B/YWHAE/TUBA1B/BID/CHEK2/HSPA1A/CTNNB1/SMAD3/SQSTM1
## GO:0019207                                  ERBB3/CCND1/CDKN1A/CDKN1B/EGFR/PIK3R1/PIK3R2/AKT1/CCNE2/AKT1S1/YWHAB/CDKN2A/CAV1/CASP3/CCNE1/PIK3CA/RICTOR
##            Count
## GO:0019902    18
## GO:0140297    25
## GO:0019903    15
## GO:0004674    21
## GO:0031625    18
## GO:0019207    17
##                    ID                                   Description GeneRatio
## GO:0043434 GO:0043434                   response to peptide hormone    32/137
## GO:0051402 GO:0051402                      neuron apoptotic process    27/137
## GO:0000082 GO:0000082         G1/S transition of mitotic cell cycle    23/137
## GO:0062197 GO:0062197          cellular response to chemical stress    25/137
## GO:0071375 GO:0071375 cellular response to peptide hormone stimulus    25/137
## GO:0018105 GO:0018105               peptidyl-serine phosphorylation    24/137
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0043434 438/18888 3.011422e-23 1.351526e-19 6.102091e-20
## GO:0051402 292/18888 2.438584e-22 5.472182e-19 2.470671e-19
## GO:0000082 234/18888 1.018094e-19 1.523069e-16 6.876600e-17
## GO:0062197 311/18888 3.085904e-19 2.769907e-16 1.250603e-16
## GO:0071375 311/18888 3.085904e-19 2.769907e-16 1.250603e-16
## GO:0018105 282/18888 4.525460e-19 3.363408e-16 1.518567e-16
##                                                                                                                                                                                                 geneID
## GO:0043434 ERRFI1/AKT2/RB1/CDKN1B/IRS1/PIK3R1/PIK3R2/RAF1/PTGS2/SHC1/AKT1/STAT5A/STAT3/PARP1/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/PXN/EEF2K/PRKCD/PTK2/CAV1/TFF1/SMAD3/PIK3CA/MAPK3/RPS6KB1/BRAF/COL6A1/TSC1
## GO:0051402                                  AKT2/G6PD/BCL2/ERBB3/KRAS/RB1/CCND1/BCL2L11/FOXO3/BCL2L1/PARP1/XIAP/GSK3B/AKT1S1/BID/CASP9/AXL/MSH2/CASP3/CTNNB1/GAPDH/PIK3CA/DIABLO/BRAF/COL6A1/GATA3/ATM
## GO:0000082                                                        PTEN/BCL2/RB1/CCND1/CDKN1A/CDKN1B/MYC/EGFR/EZH2/AKT1/EIF4E/ARID1A/CCNE2/BID/CHEK2/E2F1/CDKN2A/CCNE1/CDK1/EIF4EBP1/EIF4G1/RPS6KB1/ATM
## GO:0062197                                                     MET/G6PD/EGFR/JUN/EZH2/PTGS2/FOXO3/AKT1/PARP1/MAPT/PRKAA1/MAPK1/MAPK8/PXN/PRKCD/HSPA1A/AXL/CAV1/CASP3/MAPK9/CDK1/PRDX1/PIK3CA/MAPK3/ATM
## GO:0071375                                          AKT2/RB1/IRS1/PIK3R1/PIK3R2/RAF1/SHC1/AKT1/STAT5A/STAT3/PARP1/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/PXN/EEF2K/PRKCD/PTK2/CAV1/PIK3CA/MAPK3/RPS6KB1/COL6A1
## GO:0018105                                                       AKT2/PTEN/BCL2/EGFR/RAF1/PTGS2/AKT1/GSK3B/PRKAA1/PRKCA/MAPK1/MAPK8/PRKCD/CAV1/MAPK9/CDK1/EIF4G1/RET/RPS6KB1/TFRC/NEK7/RICTOR/BRAF/ATM
##            Count
## GO:0043434    32
## GO:0051402    27
## GO:0000082    23
## GO:0062197    25
## GO:0071375    25
## GO:0018105    24
##                    ID
## GO:0005925 GO:0005925
## GO:0030055 GO:0030055
## GO:0000781 GO:0000781
## GO:1902911 GO:1902911
## GO:0044853 GO:0044853
## GO:0061695 GO:0061695
##                                                               Description
## GO:0005925                                                 focal adhesion
## GO:0030055                                        cell-substrate junction
## GO:0000781                                   chromosome, telomeric region
## GO:1902911                                         protein kinase complex
## GO:0044853                                           plasma membrane raft
## GO:0061695 transferase complex, transferring phosphorus-containing groups
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0005925    19/137 421/19894 9.134021e-11 2.544137e-08 1.503712e-08
## GO:0030055    19/137 431/19894 1.360501e-10 2.544137e-08 1.503712e-08
## GO:0000781    12/137 173/19894 2.763862e-09 3.445615e-07 2.036530e-07
## GO:1902911     9/137 150/19894 9.764082e-07 8.318736e-05 4.916787e-05
## GO:0044853     8/137 113/19894 1.147925e-06 8.318736e-05 4.916787e-05
## GO:0061695    12/137 308/19894 1.516804e-06 8.318736e-05 4.916787e-05
##                                                                                                                geneID
## GO:0005925 KRAS/MYH9/EGFR/PIK3R2/SHC1/YWHAZ/ITGA2/MAPK1/PXN/YWHAE/YWHAB/HSPA1A/PTK2/CAV1/ANXA1/CTNNB1/MAPK3/CDH2/TGM2
## GO:0030055 KRAS/MYH9/EGFR/PIK3R2/SHC1/YWHAZ/ITGA2/MAPK1/PXN/YWHAE/YWHAB/HSPA1A/PTK2/CAV1/ANXA1/CTNNB1/MAPK3/CDH2/TGM2
## GO:0000781                                       EZH2/PARP1/CHEK1/RAD51/ERCC1/CHEK2/MSH2/CDK1/XRCC1/TP53BP1/RAD50/ATM
## GO:1902911                                                        RB1/CCND1/CDKN1A/IRS1/IGF1R/PRKAA1/CCNE2/CCNE1/CDK1
## GO:0044853                                                              IRS1/PTGS2/IGF1R/MAPK1/CAV1/CTNNB1/MAPK3/CDH2
## GO:0061695                                   RB1/CCND1/CDKN1A/IRS1/PIK3R1/PIK3R2/IGF1R/PRKAA1/CCNE2/CCNE1/CDK1/PIK3CA
##            Count
## GO:0005925    19
## GO:0030055    19
## GO:0000781    12
## GO:1902911     9
## GO:0044853     8
## GO:0061695    12
##                    ID                              Description GeneRatio
## GO:0019902 GO:0019902                      phosphatase binding    18/148
## GO:0019903 GO:0019903              protein phosphatase binding    16/148
## GO:0031625 GO:0031625         ubiquitin protein ligase binding    21/148
## GO:0044389 GO:0044389    ubiquitin-like protein ligase binding    21/148
## GO:0140297 GO:0140297 DNA-binding transcription factor binding    24/148
## GO:0004674 GO:0004674 protein serine/threonine kinase activity    21/148
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0019902 189/18522 1.235535e-14 7.005484e-12 3.680594e-12
## GO:0019903 142/18522 2.783063e-14 7.889983e-12 4.145299e-12
## GO:0031625 305/18522 4.497766e-14 8.500779e-12 4.466203e-12
## GO:0044389 324/18522 1.471113e-13 2.085303e-11 1.095592e-11
## GO:0140297 478/18522 6.101929e-13 6.919588e-11 3.635465e-11
## GO:0004674 427/18522 2.869483e-11 2.711661e-09 1.424673e-09
##                                                                                                                                            geneID
## GO:0019902                               MET/MAPK14/BCL2/PTK2/CDKN1B/EGFR/PIK3R1/PIK3R2/STAT3/CTNNB1/MAPT/MAPK1/MAPK8/PXN/YWHAE/RPS6KB1/TSC2/CDH2
## GO:0019903                                          MET/MAPK14/BCL2/PTK2/CDKN1B/EGFR/PIK3R1/PIK3R2/STAT3/CTNNB1/MAPT/MAPK8/PXN/YWHAE/RPS6KB1/CDH2
## GO:0031625           BCL2/ERBB3/RB1/CDKN1A/CDKN1B/EGFR/JUN/YWHAZ/PARP1/CASP8/CTNNB1/GSK3B/YWHAE/BECN1/TUBA1B/BID/CHEK2/SMAD1/HSPA1A/NFE2L2/SQSTM1
## GO:0044389           BCL2/ERBB3/RB1/CDKN1A/CDKN1B/EGFR/JUN/YWHAZ/PARP1/CASP8/CTNNB1/GSK3B/YWHAE/BECN1/TUBA1B/BID/CHEK2/SMAD1/HSPA1A/NFE2L2/SQSTM1
## GO:0140297 ESR1/MAPK14/BCL2/NCOA3/RB1/MYC/JUN/ETS1/YWHAZ/STAT5A/STAT3/PARP1/AR/CTNNB1/EIF4E/GSK3B/ARID1A/E2F1/YAP1/SMAD4/NFE2L2/TP53BP1/GATA3/VHL
## GO:0004674             AKT2/MAPK14/EGFR/RAF1/AKT1/ATM/CDK1/CHEK1/GSK3B/PRKAA1/PRKCA/MAPK1/MAPK8/EEF2K/CHEK2/PRKCD/PIK3CA/RPS6KB1/NEK7/BRAF/ACVRL1
##            Count
## GO:0019902    18
## GO:0019903    16
## GO:0031625    21
## GO:0044389    21
## GO:0140297    24
## GO:0004674    21
##                    ID                                   Description GeneRatio
## GO:0043434 GO:0043434                   response to peptide hormone    33/148
## GO:0051402 GO:0051402                      neuron apoptotic process    27/148
## GO:0071375 GO:0071375 cellular response to peptide hormone stimulus    26/148
## GO:0010038 GO:0010038                         response to metal ion    27/148
## GO:0071214 GO:0071214         cellular response to abiotic stimulus    26/148
## GO:0104004 GO:0104004   cellular response to environmental stimulus    26/148
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0043434 438/18888 3.007983e-23 1.418866e-19 6.462415e-20
## GO:0051402 292/18888 2.098897e-21 4.950248e-18 2.254657e-18
## GO:0071375 311/18888 1.588846e-19 2.498196e-16 1.137837e-16
## GO:0010038 360/18888 4.960946e-19 5.850195e-16 2.664550e-16
## GO:0071214 334/18888 9.474001e-19 7.448144e-16 3.392357e-16
## GO:0104004 334/18888 9.474001e-19 7.448144e-16 3.392357e-16
##                                                                                                                                                                                                        geneID
## GO:0043434 AKT2/ERRFI1/MAPK14/RB1/PTK2/CDKN1B/IRS1/PIK3R1/PIK3R2/RAF1/PTGS2/SHC1/AKT1/STAT5A/STAT3/PARP1/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/PXN/EEF2K/PRKCD/CAV1/TFF1/NFE2L2/PIK3CA/RPS6KB1/TSC2/BRAF/COL6A1/TSC1
## GO:0051402                                         AKT2/G6PD/BCL2/ERBB3/KRAS/RB1/CCND1/BCL2L11/FOXO3/BCL2L1/ATM/PARP1/XIAP/CASP8/CTNNB1/GSK3B/DIABLO/AKT1S1/BID/AXL/MSH2/CASP3/GAPDH/PIK3CA/BRAF/COL6A1/GATA3
## GO:0071375                                           AKT2/RB1/PTK2/IRS1/PIK3R1/PIK3R2/RAF1/SHC1/AKT1/STAT5A/STAT3/PARP1/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/PXN/EEF2K/PRKCD/CAV1/NFE2L2/PIK3CA/RPS6KB1/TSC2/COL6A1
## GO:0010038                                               G6PD/BCL2/KIT/CDKN1B/EGFR/JUN/PTGS2/AKT1/PARP1/CASP8/CDK1/MAPT/PRKAA1/MAPK1/MAPK8/TFRC/BECN1/NDRG1/EEF2K/ERCC1/CAV1/CASP3/TFF1/CDH1/NFE2L2/NEK7/BRAF
## GO:0071214                                        AKT2/PTEN/MAPK14/CDKN1A/MYC/EGFR/PIK3R1/PTGS2/BCL2L1/ATM/PARP1/CASP8/CHEK1/IGF1R/ITGA2/MAPK8/RAD51/ERCC1/CHEK2/RAB11B/PRKCD/CASP3/YAP1/PIK3CA/TP53BP1/GATA3
## GO:0104004                                        AKT2/PTEN/MAPK14/CDKN1A/MYC/EGFR/PIK3R1/PTGS2/BCL2L1/ATM/PARP1/CASP8/CHEK1/IGF1R/ITGA2/MAPK8/RAD51/ERCC1/CHEK2/RAB11B/PRKCD/CASP3/YAP1/PIK3CA/TP53BP1/GATA3
##            Count
## GO:0043434    33
## GO:0051402    27
## GO:0071375    26
## GO:0010038    27
## GO:0071214    26
## GO:0104004    26
##                    ID
## GO:0005925 GO:0005925
## GO:0030055 GO:0030055
## GO:0000781 GO:0000781
## GO:0044853 GO:0044853
## GO:0005901 GO:0005901
## GO:0061695 GO:0061695
##                                                               Description
## GO:0005925                                                 focal adhesion
## GO:0030055                                        cell-substrate junction
## GO:0000781                                   chromosome, telomeric region
## GO:0044853                                           plasma membrane raft
## GO:0005901                                                        caveola
## GO:0061695 transferase complex, transferring phosphorus-containing groups
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0005925    19/148 421/19894 3.544077e-10 1.008169e-07 5.610151e-08
## GO:0030055    19/148 431/19894 5.250880e-10 1.008169e-07 5.610151e-08
## GO:0000781    12/148 173/19894 6.677535e-09 8.547245e-07 4.756279e-07
## GO:0044853     9/148 113/19894 1.691051e-07 1.334059e-05 7.423626e-06
## GO:0005901     8/148  82/19894 1.737055e-07 1.334059e-05 7.423626e-06
## GO:0061695    13/148 308/19894 5.367077e-07 3.434929e-05 1.911433e-05
##                                                                                                                 geneID
## GO:0005925 KRAS/MYH9/PTK2/EGFR/PIK3R2/SHC1/YWHAZ/CTNNB1/ITGA2/MAPK1/PXN/YWHAE/YWHAB/HSPA1A/CAV1/ANXA1/TGM2/CTNNA1/CDH2
## GO:0030055 KRAS/MYH9/PTK2/EGFR/PIK3R2/SHC1/YWHAZ/CTNNB1/ITGA2/MAPK1/PXN/YWHAE/YWHAB/HSPA1A/CAV1/ANXA1/TGM2/CTNNA1/CDH2
## GO:0000781                                        EZH2/ATM/PARP1/CDK1/CHEK1/RAD51/ERCC1/CHEK2/MSH2/XRCC1/TP53BP1/RAD50
## GO:0044853                                                         IRS1/PTGS2/CTNNB1/IGF1R/MAPK1/CAV1/CDH1/CTNNA1/CDH2
## GO:0005901                                                              IRS1/PTGS2/CTNNB1/IGF1R/MAPK1/CAV1/CDH1/CTNNA1
## GO:0061695                              RB1/CCND1/CDKN1A/IRS1/PIK3R1/PIK3R2/CDK1/IGF1R/PRKAA1/BECN1/CCNE2/CCNE1/PIK3CA
##            Count
## GO:0005925    19
## GO:0030055    19
## GO:0000781    12
## GO:0044853     9
## GO:0005901     8
## GO:0061695    13
##                    ID                              Description GeneRatio
## GO:0019902 GO:0019902                      phosphatase binding    18/147
## GO:0140297 GO:0140297 DNA-binding transcription factor binding    25/147
## GO:0031625 GO:0031625         ubiquitin protein ligase binding    20/147
## GO:0019903 GO:0019903              protein phosphatase binding    15/147
## GO:0044389 GO:0044389    ubiquitin-like protein ligase binding    20/147
## GO:0004674 GO:0004674 protein serine/threonine kinase activity    22/147
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0019902 189/18522 1.094884e-14 6.197044e-12 3.227027e-12
## GO:0140297 478/18522 6.481817e-14 1.834354e-11 9.552152e-12
## GO:0031625 305/18522 4.135497e-13 6.184293e-11 3.220387e-11
## GO:0019903 142/18522 4.370525e-13 6.184293e-11 3.220387e-11
## GO:0044389 324/18522 1.268528e-12 1.435974e-10 7.477639e-11
## GO:0004674 427/18522 3.229251e-12 3.046260e-10 1.586299e-10
##                                                                                                                                                 geneID
## GO:0019902                                    MET/BCL2/PTK2/CDKN1B/EGFR/PIK3R1/PIK3R2/STAT3/CTNNB1/MAPT/MAPK1/MAPK8/PXN/YWHAE/SMAD3/MAPK3/RPS6KB1/CDH2
## GO:0140297 ESR1/BCL2/NCOA3/RB1/MYC/JUN/ETS1/YWHAZ/VHL/STAT5A/STAT3/PARP1/AR/CTNNB1/EIF4E/GSK3B/ARID1A/E2F1/CDKN2A/YAP1/SMAD3/SMAD4/MAPK3/TP53BP1/GATA3
## GO:0031625                       BCL2/ERBB3/HSPA1A/RB1/CDKN1A/CDKN1B/EGFR/JUN/YWHAZ/PARP1/CASP8/CTNNB1/GSK3B/YWHAE/BECN1/TUBA1B/BID/CHEK2/SMAD3/SQSTM1
## GO:0019903                                                      MET/BCL2/PTK2/CDKN1B/EGFR/PIK3R1/PIK3R2/STAT3/CTNNB1/MAPT/MAPK8/PXN/YWHAE/RPS6KB1/CDH2
## GO:0044389                       BCL2/ERBB3/HSPA1A/RB1/CDKN1A/CDKN1B/EGFR/JUN/YWHAZ/PARP1/CASP8/CTNNB1/GSK3B/YWHAE/BECN1/TUBA1B/BID/CHEK2/SMAD3/SQSTM1
## GO:0004674               AKT2/EGFR/RAF1/AKT1/ATM/CDK1/CHEK1/MTOR/GSK3B/PRKAA1/PRKCA/MAPK1/MAPK8/EEF2K/CHEK2/PRKCD/MAPK9/PIK3CA/MAPK3/RPS6KB1/NEK7/BRAF
##            Count
## GO:0019902    18
## GO:0140297    25
## GO:0031625    20
## GO:0019903    15
## GO:0044389    20
## GO:0004674    22
##                    ID                                 Description GeneRatio
## GO:0043434 GO:0043434                 response to peptide hormone    34/147
## GO:0051402 GO:0051402                    neuron apoptotic process    28/147
## GO:0010038 GO:0010038                       response to metal ion    29/147
## GO:0071214 GO:0071214       cellular response to abiotic stimulus    28/147
## GO:0104004 GO:0104004 cellular response to environmental stimulus    28/147
## GO:0048732 GO:0048732                           gland development    31/147
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0043434 438/18888 1.762332e-24 8.311157e-21 3.706462e-21
## GO:0051402 292/18888 1.066100e-22 2.513864e-19 1.121088e-19
## GO:0010038 360/18888 2.350047e-21 3.694274e-18 1.647506e-18
## GO:0071214 334/18888 4.209904e-21 3.970781e-18 1.770818e-18
## GO:0104004 334/18888 4.209904e-21 3.970781e-18 1.770818e-18
## GO:0048732 449/18888 8.026869e-21 5.403225e-18 2.409634e-18
##                                                                                                                                                                                                           geneID
## GO:0043434 AKT2/ERRFI1/RB1/PTK2/CDKN1B/IRS1/PIK3R1/PIK3R2/RAF1/PTGS2/SHC1/AKT1/STAT5A/STAT3/PARP1/MTOR/GSK3B/IGF1R/PRKAA1/PRKCA/MAPK1/PXN/EEF2K/PRKCD/CAV1/TFF1/SMAD3/PIK3CA/MAPK3/RPS6KB1/BRAF/COL6A1/TSC1/XBP1
## GO:0051402                                      AKT2/G6PD/BCL2/ERBB3/KRAS/RB1/CCND1/BCL2L11/FOXO3/BCL2L1/ATM/PARP1/XIAP/CASP8/CTNNB1/GSK3B/AKT1S1/BID/CASP9/AXL/MSH2/CASP3/GAPDH/PIK3CA/DIABLO/BRAF/COL6A1/GATA3
## GO:0010038                                       G6PD/BCL2/KIT/CDKN1B/EGFR/JUN/PTGS2/AKT1/PARP1/CASP8/CDK1/MAPT/PRKAA1/MAPK1/MAPK8/BECN1/NDRG1/EEF2K/ERCC1/CASP9/CAV1/CASP3/MAPK9/TFF1/CDH1/MAPK3/TFRC/NEK7/BRAF
## GO:0071214                                 AKT2/PTEN/CDKN1A/MYC/EGFR/PIK3R1/PTGS2/BCL2L1/ATM/PARP1/CASP8/CHEK1/MTOR/IGF1R/ITGA2/MAPK8/RAD51/ERCC1/CHEK2/RAB11B/PRKCD/CASP9/CASP3/YAP1/PIK3CA/MAPK3/TP53BP1/GATA3
## GO:0104004                                 AKT2/PTEN/CDKN1A/MYC/EGFR/PIK3R1/PTGS2/BCL2L1/ATM/PARP1/CASP8/CHEK1/MTOR/IGF1R/ITGA2/MAPK8/RAD51/ERCC1/CHEK2/RAB11B/PRKCD/CASP9/CASP3/YAP1/PIK3CA/MAPK3/TP53BP1/GATA3
## GO:0048732                         ESR1/AKT2/ERRFI1/MET/NOTCH1/BCL2/CCND1/CDKN1B/EGFR/BCL2L11/EZH2/RAF1/AKT1/ATM/STAT5A/AR/CTNNB1/ITGA2/MAPK1/SRSF1/CAV1/CDH1/SMAD3/SMAD4/PIK3CA/MAPK3/FASN/BRAF/TGM2/GATA3/XBP1
##            Count
## GO:0043434    34
## GO:0051402    28
## GO:0010038    29
## GO:0071214    28
## GO:0104004    28
## GO:0048732    31
##                    ID                  Description GeneRatio   BgRatio
## GO:0005925 GO:0005925               focal adhesion    19/147 421/19894
## GO:0030055 GO:0030055      cell-substrate junction    19/147 431/19894
## GO:0000781 GO:0000781 chromosome, telomeric region    12/147 173/19894
## GO:0044853 GO:0044853         plasma membrane raft     9/147 113/19894
## GO:0005901 GO:0005901                      caveola     8/147  82/19894
## GO:0031968 GO:0031968     organelle outer membrane    12/147 248/19894
##                  pvalue     p.adjust       qvalue
## GO:0005925 3.149553e-10 8.963731e-08 5.086328e-08
## GO:0030055 4.668610e-10 8.963731e-08 5.086328e-08
## GO:0000781 6.182315e-09 7.913363e-07 4.490313e-07
## GO:0044853 1.595723e-07 1.266136e-05 7.184491e-06
## GO:0005901 1.648615e-07 1.266136e-05 7.184491e-06
## GO:0031968 3.273993e-07 1.957302e-05 1.110640e-05
##                                                                                                                geneID
## GO:0005925 HSPA1A/KRAS/MYH9/PTK2/EGFR/PIK3R2/SHC1/YWHAZ/CTNNB1/ITGA2/MAPK1/PXN/YWHAE/YWHAB/CAV1/ANXA1/MAPK3/CDH2/TGM2
## GO:0030055 HSPA1A/KRAS/MYH9/PTK2/EGFR/PIK3R2/SHC1/YWHAZ/CTNNB1/ITGA2/MAPK1/PXN/YWHAE/YWHAB/CAV1/ANXA1/MAPK3/CDH2/TGM2
## GO:0000781                                       EZH2/ATM/PARP1/CDK1/CHEK1/RAD51/ERCC1/CHEK2/MSH2/XRCC1/TP53BP1/RAD50
## GO:0044853                                                         IRS1/PTGS2/CTNNB1/IGF1R/MAPK1/CAV1/CDH1/MAPK3/CDH2
## GO:0005901                                                              IRS1/PTGS2/CTNNB1/IGF1R/MAPK1/CAV1/CDH1/MAPK3
## GO:0031968                                     BCL2/KRAS/BCL2L11/RAF1/PTGS2/FOXO3/BCL2L1/CASP8/MTOR/BECN1/BID/RPS6KB1
##            Count
## GO:0005925    19
## GO:0030055    19
## GO:0000781    12
## GO:0044853     9
## GO:0005901     8
## GO:0031968    12
barplot(ego_MF[[1]], title = "groupGO, Molecular Function, \n RPPAArray, FDR = 0.9")

barplot(ego_MF[[2]], title = "groupGO, Molecular Function, \n RNASeq2GeneNorm, FDR = 1-1e-14")

barplot(ego_MF[[3]], title = "groupGO, Molecular Function, \n RNASeq2GeneNorm, FDR = 1-1e-6")

barplot(ego_MF[[4]], title = "groupGO, Molecular Function, \n miRNASeqGene, FDR = 1-1e-13")

barplot(ego_MF[[5]], title = "groupGO, Molecular Function, \n miRNASeqGene, FDR = 1-1e-6")

barplot(ego_MF[[6]], title = "groupGO, Molecular Function, \n All datasets, FDR = 1-1e-14")

barplot(ego_MF[[7]], title = "groupGO, Molecular Function, \n All datasets, FDR = 1-1e-6")

barplot(ego_MF[[8]], title = "groupGO, Molecular Function, \n RPPAArray, Surviving Patients, FDR = 0.9")

barplot(ego_MF[[9]], title = "groupGO, Molecular Function, \n RPPAArray, Deceased Patients, FDR = 0.9")

barplot(ego_MF[[10]], title = "groupGO, Molecular Function, \n RNASeq2GeneNorm, Surviving Patients, FDR = 1-1e-14")

barplot(ego_MF[[11]], title = "groupGO, Molecular Function, \n RNASeq2GeneNorm, Deceased Patients, FDR = 1-1e-14")

barplot(ego_MF[[12]], title = "groupGO, Molecular Function, \n RNASeq2GeneNorm, Surviving Patients, FDR = 1-1e-6")

barplot(ego_MF[[13]], title = "groupGO, Molecular Function, \n RNASeq2GeneNorm, Deceased Patients, FDR = 1-1e-6")

barplot(ego_MF[[14]], title = "groupGO, Molecular Function, \n miRNASeqGene, Surviving Patients, FDR = 1-1e-13")

barplot(ego_MF[[15]], title = "groupGO, Molecular Function, \n miRNASeqGene, Deceased Patients, FDR = 1-1e-13")

barplot(ego_MF[[16]], title = "groupGO, Molecular Function, \n miRNASeqGene, Surviving Patients, FDR = 1-1e-6")

barplot(ego_MF[[17]], title = "groupGO, Molecular Function, \n miRNASeqGene, Deceased Patients, FDR = 1-1e-6")

barplot(ego_MF[[18]], title = "groupGO, Molecular Function, \n All datasets, Surviving Patients, FDR = 1-1e-14")

barplot(ego_MF[[19]], title = "groupGO, Molecular Function, \n All datasets, Deceased Patients, FDR = 1-1e-14")

barplot(ego_MF[[20]], title = "groupGO, Molecular Function, \n All datasets, Surviving Patients, FDR = 1-1e-6")

barplot(ego_MF[[21]], title = "groupGO, Molecular Function, \n All datasets, Deceased Patients, FDR = 1-1e-6")

barplot(ego_BP[[1]], title = "groupGO, Biological Process, \n RPPAArray, FDR = 0.9")

barplot(ego_BP[[2]], title = "groupGO, Biological Process, \n RNASeq2GeneNorm, FDR = 1-1e-14")

barplot(ego_BP[[3]], title = "groupGO, Biological Process, \n RNASeq2GeneNorm, FDR = 1-1e-6")

barplot(ego_BP[[4]], title = "groupGO, Biological Process, \n miRNASeqGene, FDR = 1-1e-13")

barplot(ego_BP[[5]], title = "groupGO, Biological Process, \n miRNASeqGene, FDR = 1-1e-6")

barplot(ego_BP[[6]], title = "groupGO, Biological Process, \n All datasets, FDR = 1-1e-14")

barplot(ego_BP[[7]], title = "groupGO, Biological Process, \n All datasets, FDR = 1-1e-6")

barplot(ego_BP[[8]], title = "groupGO, Biological Process, \n RPPAArray, Surviving Patients, FDR = 0.9")

barplot(ego_BP[[9]], title = "groupGO, Biological Process, \n RPPAArray, Deceased Patients, FDR = 0.9")

barplot(ego_BP[[10]], title = "groupGO, Biological Process, \n RNASeq2GeneNorm, Surviving Patients, FDR = 1-1e-14")

barplot(ego_BP[[11]], title = "groupGO, Biological Process, \n RNASeq2GeneNorm, Deceased Patients, FDR = 1-1e-14")

barplot(ego_BP[[12]], title = "groupGO, Biological Process, \n RNASeq2GeneNorm, Surviving Patients, FDR = 1-1e-6")

barplot(ego_BP[[13]], title = "groupGO, Biological Process, \n RNASeq2GeneNorm, Deceased Patients, FDR = 1-1e-6")

barplot(ego_BP[[14]], title = "groupGO, Biological Process, \n miRNASeqGene, Surviving Patients, FDR = 1-1e-14")

barplot(ego_BP[[15]], title = "groupGO, Biological Process, \n miRNASeqGene, Deceased Patients, FDR = 1-1e-14")

barplot(ego_BP[[16]], title = "groupGO, Biological Process, \n miRNASeqGene, Surviving Patients, FDR = 1-1e-6")

barplot(ego_BP[[17]], title = "groupGO, Biological Process, \n miRNASeqGene, Deceased Patients, FDR = 1-1e-6")

barplot(ego_BP[[18]], title = "groupGO, Biological Process, \n All datasets, Surviving Patients, FDR = 1-1e-14")

barplot(ego_BP[[19]], title = "groupGO, Biological Process, \n All datasets, Deceased Patients, FDR = 1-1e-14")

barplot(ego_BP[[20]], title = "groupGO, Biological Process, \n All datasets, Surviving Patients, FDR = 1-1e-6")

barplot(ego_BP[[21]], title = "groupGO, Biological Process, \n All datasets, Deceased Patients, FDR = 1-1e-6")

barplot(ego_CC[[1]], title = "groupGO, Cellular Component, \n RPPAArray, FDR = 0.9")

barplot(ego_CC[[2]], title = "groupGO, Cellular Component, \n RNASeq2GeneNorm, FDR = 1-1e-14")

barplot(ego_CC[[3]], title = "groupGO, Cellular Component, \n RNASeq2GeneNorm, FDR = 1-1e-6")

barplot(ego_CC[[4]], title = "groupGO, Cellular Component, \n miRNASeqGene, FDR = 1-1e-13")

barplot(ego_CC[[5]], title = "groupGO, Cellular Component, \n miRNASeqGene, FDR = 1-1e-6")

barplot(ego_CC[[6]], title = "groupGO, Cellular Component, \n All datasets, FDR = 1-1e-14")

barplot(ego_CC[[7]], title = "groupGO, Cellular Component, \n All datasets, FDR = 1-1e-6")

barplot(ego_CC[[8]], title = "groupGO, Cellular Component, \n RPPAArray, Surviving Patients, FDR = 0.9")

barplot(ego_CC[[9]], title = "groupGO, Cellular Component, \n RPPAArray, Deceased Patients, FDR = 0.9")

barplot(ego_CC[[10]], title = "groupGO, Cellular Component, \n RNASeq2GeneNorm, Surviving Patients, FDR = 1-1e-14")

barplot(ego_CC[[11]], title = "groupGO, Cellular Component, \n RNASeq2GeneNorm, Deceased Patients, FDR = 1-1e-14")

barplot(ego_CC[[12]], title = "groupGO, Cellular Component, \n RNASeq2GeneNorm, Surviving Patients, FDR = 1-1e-6")

barplot(ego_CC[[13]], title = "groupGO, Cellular Component, \n RNASeq2GeneNorm, Deceased Patients, FDR = 1-1e-6")

barplot(ego_CC[[14]], title = "groupGO, Cellular Component, \n miRNASeqGene, Surviving Patients, FDR = 1-1e-13")

barplot(ego_CC[[15]], title = "groupGO, Cellular Component, \n miRNASeqGene, Deceased Patients, FDR = 1-1e-13")

barplot(ego_CC[[16]], title = "groupGO, Cellular Component, \n miRNASeqGene, Surviving Patients, FDR = 1-1e-6")

barplot(ego_CC[[17]], title = "groupGO, Cellular Component, \n miRNASeqGene, Deceased Patients, FDR = 1-1e-6")

barplot(ego_CC[[18]], title = "groupGO, Cellular Component, \n All datasets, Surviving Patients, FDR = 1-1e-14")

barplot(ego_CC[[19]], title = "groupGO, Cellular Component, \n All datasets, Deceased Patients, FDR = 1-1e-14")

barplot(ego_CC[[20]], title = "groupGO, Cellular Component, \n All datasets, Surviving Patients, FDR = 1-1e-6")

barplot(ego_CC[[21]], title = "groupGO, Cellular Component, \n All datasets, Deceased Patients, FDR = 1-1e-6")

DAG plots for ego

goplot(ego_MF[[1]]) + labs(title = "groupGO, Molecular Function, \n RPPAArray, FDR = 0.9")

goplot(ego_MF[[2]]) + labs(title = "groupGO, Molecular Function, \n RNASeq2GeneNorm, FDR = 1-1e-14")

goplot(ego_MF[[3]]) + labs(title = "groupGO, Molecular Function, \n RNASeq2GeneNorm, FDR = 1-1e-6")

goplot(ego_MF[[4]]) + labs(title = "groupGO, Molecular Function, \n miRNASeqGene, FDR = 1-1e-13")

goplot(ego_MF[[5]]) + labs(title = "groupGO, Molecular Function, \n miRNASeqGene, FDR = 1-1e-6")

goplot(ego_MF[[6]]) + labs(title = "groupGO, Molecular Function, \n All datasets, FDR = 1-1e-14")

goplot(ego_MF[[7]]) + labs(title = "groupGO, Molecular Function, \n All datasets, FDR = 1-1e-6")

goplot(ego_MF[[8]]) + labs(title = "groupGO, Molecular Function, \n RPPAArray, Surviving Patients, FDR = 0.9")

goplot(ego_MF[[9]]) + labs(title = "groupGO, Molecular Function, \n RPPAArray, Deceased Patients, FDR = 0.9")

goplot(ego_MF[[10]]) + labs(title = "groupGO, Molecular Function, \n RNASeq2GeneNorm, Surviving Patients, FDR = 1-1e-14")

goplot(ego_MF[[11]]) + labs(title = "groupGO, Molecular Function, \n RNASeq2GeneNorm, Deceased Patients, FDR = 1-1e-14")

goplot(ego_MF[[12]]) + labs(title = "groupGO, Molecular Function, \n RNASeq2GeneNorm, Surviving Patients, FDR = 1-1e-6")

goplot(ego_MF[[13]]) + labs(title = "groupGO, Molecular Function, \n RNASeq2GeneNorm, Deceased Patients, FDR = 1-1e-6")

goplot(ego_MF[[14]]) + labs(title = "groupGO, Molecular Function, \n miRNASeqGene, Surviving Patients, FDR = 1-1e-13")

goplot(ego_MF[[15]]) + labs(title = "groupGO, Molecular Function, \n miRNASeqGene, Deceased Patients, FDR = 1-1e-13")

goplot(ego_MF[[16]]) + labs(title = "groupGO, Molecular Function, \n miRNASeqGene, Surviving Patients, FDR = 1-1e-6")

goplot(ego_MF[[17]]) + labs(title = "groupGO, Molecular Function, \n miRNASeqGene, Deceased Patients, FDR = 1-1e-6")

goplot(ego_MF[[18]]) + labs(title = "groupGO, Molecular Function, \n All datasets, Surviving Patients, FDR = 1-1e-14")

goplot(ego_MF[[19]]) + labs(title = "groupGO, Molecular Function, \n All datasets, Deceased Patients, FDR = 1-1e-14")

goplot(ego_MF[[20]]) + labs(title = "groupGO, Molecular Function, \n All datasets, Surviving Patients, FDR = 1-1e-6")

goplot(ego_MF[[21]]) + labs(title = "groupGO, Molecular Function, \n All datasets, Deceased Patients, FDR = 1-1e-6")

goplot(ego_BP[[1]]) + labs(title = "groupGO, Biological Process, \n RPPAArray, FDR = 0.9")
## Warning: ggrepel: 5 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

goplot(ego_BP[[2]]) + labs(title = "groupGO, Biological Process, \n RNASeq2GeneNorm, FDR = 1-1e-14")
## Warning: ggrepel: 10 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

goplot(ego_BP[[3]]) + labs(title = "groupGO, Biological Process, \n RNASeq2GeneNorm, FDR = 1-1e-6")
## Warning: ggrepel: 9 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

goplot(ego_BP[[4]]) + labs(title = "groupGO, Biological Process, \n miRNASeqGene, FDR = 1-1e-13")

goplot(ego_BP[[5]]) + labs(title = "groupGO, Biological Process, \n miRNASeqGene, FDR = 1-1e-6")

goplot(ego_BP[[6]]) + labs(title = "groupGO, Biological Process, \n All datasets, FDR = 1-1e-14")

goplot(ego_BP[[7]]) + labs(title = "groupGO, Biological Process, \n All datasets, FDR = 1-1e-6")
## Warning: ggrepel: 2 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

goplot(ego_BP[[8]]) + labs(title = "groupGO, Biological Process, \n RPPAArray, Surviving Patients, FDR = 0.9")
## Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

goplot(ego_BP[[9]]) + labs(title = "groupGO, Biological Process, \n RPPAArray, Deceased Patients, FDR = 0.9")

goplot(ego_BP[[10]]) + labs(title = "groupGO, Biological Process, \n RNASeq2GeneNorm, Surviving Patients, FDR = 1-1e-14")
## Warning: ggrepel: 10 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

goplot(ego_BP[[11]]) + labs(title = "groupGO, Biological Process, \n RNASeq2GeneNorm, Deceased Patients, FDR = 1-1e-14")
## Warning: ggrepel: 16 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

goplot(ego_BP[[12]]) + labs(title = "groupGO, Biological Process, \n RNASeq2GeneNorm, Surviving Patients, FDR = 1-1e-6")
## Warning: ggrepel: 8 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

goplot(ego_BP[[13]]) + labs(title = "groupGO, Biological Process, \n RNASeq2GeneNorm, Deceased Patients, FDR = 1-1e-6")
## Warning: ggrepel: 15 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

goplot(ego_BP[[14]]) + labs(title = "groupGO, Biological Process, \n miRNASeqGene, Surviving Patients, FDR = 1-1e-14")

goplot(ego_BP[[15]]) + labs(title = "groupGO, Biological Process, \n miRNASeqGene, Deceased Patients, FDR = 1-1e-14")

goplot(ego_BP[[16]]) + labs(title = "groupGO, Biological Process, \n miRNASeqGene, Surviving Patients, FDR = 1-1e-6")

goplot(ego_BP[[17]]) + labs(title = "groupGO, Biological Process, \n miRNASeqGene, Deceased Patients, FDR = 1-1e-6")

goplot(ego_BP[[18]]) + labs(title = "groupGO, Biological Process, \n All datasets, Surviving Patients, FDR = 1-1e-14")

goplot(ego_BP[[19]]) + labs(title = "groupGO, Biological Process, \n All datasets, Deceased Patients, FDR = 1-1e-14")

goplot(ego_BP[[20]]) + labs(title = "groupGO, Biological Process, \n All datasets, Surviving Patients, FDR = 1-1e-6")

goplot(ego_BP[[21]]) + labs(title = "groupGO, Biological Process, \n All datasets, Deceased Patients, FDR = 1-1e-6")

goplot(ego_CC[[1]]) + labs(title = "groupGO, Cellular Component, \n RPPAArray, FDR = 0.9")

goplot(ego_CC[[2]]) + labs(title = "groupGO, Cellular Component, \n RNASeq2GeneNorm, FDR = 1-1e-14")

goplot(ego_CC[[3]]) + labs(title = "groupGO, Cellular Component, \n RNASeq2GeneNorm, FDR = 1-1e-6")

goplot(ego_CC[[4]]) + labs(title = "groupGO, Cellular Component, \n miRNASeqGene, FDR = 1-1e-13")

goplot(ego_CC[[5]]) + labs(title = "groupGO, Cellular Component, \n miRNASeqGene, FDR = 1-1e-6")

goplot(ego_CC[[6]]) + labs(title = "groupGO, Cellular Component, \n All datasets, FDR = 1-1e-14")

goplot(ego_CC[[7]]) + labs(title = "groupGO, Cellular Component, \n All datasets, FDR = 1-1e-6")

goplot(ego_CC[[8]]) + labs(title = "groupGO, Cellular Component, \n RPPAArray, Surviving Patients, FDR = 0.9")

goplot(ego_CC[[9]]) + labs(title = "groupGO, Cellular Component, \n RPPAArray, Deceased Patients, FDR = 0.9")

goplot(ego_CC[[10]]) + labs(title = "groupGO, Cellular Component, \n RNASeq2GeneNorm, Surviving Patients, FDR = 1-1e-14")

goplot(ego_CC[[11]]) + labs(title = "groupGO, Cellular Component, \n RNASeq2GeneNorm, Deceased Patients, FDR = 1-1e-14")

goplot(ego_CC[[12]]) + labs(title = "groupGO, Cellular Component, \n RNASeq2GeneNorm, Surviving Patients, FDR = 1-1e-6")

goplot(ego_CC[[13]]) + labs(title = "groupGO, Cellular Component, \n RNASeq2GeneNorm, Deceased Patients, FDR = 1-1e-6")

goplot(ego_CC[[14]]) + labs(title = "groupGO, Cellular Component, \n miRNASeqGene, Surviving Patients, FDR = 1-1e-13")

goplot(ego_CC[[15]]) + labs(title = "groupGO, Cellular Component, \n miRNASeqGene, Deceased Patients, FDR = 1-1e-13")

goplot(ego_CC[[16]]) + labs(title = "groupGO, Cellular Component, \n miRNASeqGene, Surviving Patients, FDR = 1-1e-6")

goplot(ego_CC[[17]]) + labs(title = "groupGO, Cellular Component, \n miRNASeqGene, Deceased Patients, FDR = 1-1e-6")

goplot(ego_CC[[18]]) + labs(title = "groupGO, Cellular Component, \n All datasets, Surviving Patients, FDR = 1-1e-14")

goplot(ego_CC[[19]]) + labs(title = "groupGO, Cellular Component, \n All datasets, Deceased Patients, FDR = 1-1e-14")

goplot(ego_CC[[20]]) + labs(title = "groupGO, Cellular Component, \n All datasets, Surviving Patients, FDR = 1-1e-6")

goplot(ego_CC[[21]]) + labs(title = "groupGO, Cellular Component, \n All datasets, Deceased Patients, FDR = 1-1e-6")

3. Export Pathway Analysis result to data

pathway = list("ggo_MF" = ggo_MF,
               "ggo_BP" = ggo_BP,
               "ggo_CC" = ggo_CC,
               "ego_MF" = ego_MF,
               "ego_BP" = ego_BP,
               "ego_CC" = ego_CC)

saveRDS(pathway, file = "data/out_pathway/pathways_ggm.rds")